RosBREEDSNP_SNP_GA_17834990_Lg1_RosCOS3660_MAF20_MDP0000694105_exon1, RosBREEDSNP_SNP_GA_17834990_Lg1_RosCOS3660_MAF20_MDP0000694105_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_GA_17834990_Lg1_RosCOS3660_MAF20_MDP0000694105_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_GA_17834990_Lg1_RosCOS3660_MAF20_MDP0000694105_exon1
50K SNP array for apple:	AX-105174612

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

ACTATAGGAGTACTCGAAGGCTTCACTTTATCCTC

3' Flanking Sequence

TTAAAGCGGTGCAACACCTTCTGGGTGTAGTTCA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Sequence

>RosBREEDSNP_SNP_GA_17834990_Lg1_RosCOS3660_MAF20_MDP0000694105_exon1 ID=RosBREEDSNP_SNP_GA_17834990_Lg1_RosCOS3660_MAF20_MDP0000694105_exon1; Name=RosBREEDSNP_SNP_GA_17834990_Lg1_RosCOS3660_MAF20_MDP0000694105_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
ACTATAGGAGTACTCGAAGGCTTCACTTTATCCTCRTTAAAGCGGTGCAA
CACCTTCTGGGTGTAGTTCA

Alignments

Feature Name	Type	Location	Analysis
MDC008059.78	contig	MDC008059.78:22358..22358.	Malus x domestica Whole Genome v1.0 Assembly & Annotation
Chr01	chromosome	Chr01:22072437..22072437.	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation