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Marker Overview
Name | RosBREEDSNP_SNP_CT_12632221_Lg17_01904_MAF50_1685980_exon3 |
dbSNP ID | ss475882135 |
SNP Array ID | 480K SNP array for apple: | AX-115182431 | IRSC 9K SNP array for apple: | RosBREEDSNP_SNP_CT_12632221_Lg17_01904_MAF50_1685980_exon3 | 20K SNP array for apple: | RosBREEDSNP_SNP_CT_12632221_Lg17_01904_MAF50_1685980_exon3 |
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Type | SNP |
SNP Alleles | T/C |
Probe 1 | RosBREEDSNP_SNP_CT_12632221_Lg17_01904_MAF50_1685980_exon3.probe: TACCAGATAACGGAATTCACTCCACACGAAATAACGGAATTCACTCCACA |
5' Flanking Sequence | TACAAAAAATATACCAGATAACGGAATTCACTCCACACGAAATAACGGAATTCACTCCAC
A |
3' Flanking Sequence | GAAATCACGAAAACCAATCTCATATCCTCAGCAGCTAACACAAAATTAAGCTCTAAATCT
C |
Species | Malus x domestica |
Publication | [view all] |
Contact | Michela Troggio
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Analyses
This genetic_marker is derived from or has results from the following analyses
Publications
Year | Publication |
2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
2016 | Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26. |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Apple-RGTxGD-F1-2015 | RGT_17 | N/A | 23.62 | RosBREEDSNP_SNP_CT_12632221_Lg17_01904_MAF50_1685980_exon3 | View |
Sequence
>RosBREEDSNP_SNP_CT_12632221_Lg17_01904_MAF50_1685980_exon3 ID=RosBREEDSNP_SNP_CT_12632221_Lg17_01904_MAF50_1685980_exon3; Name=RosBREEDSNP_SNP_CT_12632221_Lg17_01904_MAF50_1685980_exon3; organism=Malus x domestica; type=genetic_marker; length=75bp TTCACTCCACACGAAATAACGGAATTCACTCCACA[C/T]GAAATCACGA AAACCAATCTCATATCCTCAGCAGC
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