RosBREEDSNP_SNP_CA_32825196_Lg13_02890_MAF10_MDP0000507913_exon1, RosBREEDSNP_SNP_CA_32825196_Lg13_02890_MAF10_MDP0000507913_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_CA_32825196_Lg13_02890_MAF10_MDP0000507913_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_CA_32825196_Lg13_02890_MAF10_MDP0000507913_exon1
50K SNP array for apple:	AX-105219385

Type

SNP

SNP Alleles

A/C

5' Flanking Sequence

CCTTTGGGCAGCTCACAAAGGCACAGGGGCACAAA

3' Flanking Sequence

GGAGAGGAGGAGAAGAGCTGCTTTGGCAGCGTGA

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC010698.115	contig	MDC010698.115:5161..5161 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr00	chromosome	Chr00:46986728..46986728 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr00	chromosome	Chr00:46993544..46993544 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr09	chromosome	Chr09:17553410..17553410 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2012	Antanaviciute L, Fernández-Fernández F, Jansen J, Banchi E, Evans KM, Viola R, Velasco R, Dunwell JM, Troggio M, Sargent DJ. Development of a dense SNP-based linkage map of an apple rootstock progeny using the Malus Infinium whole genome genotyping array. BMC genomics. 2012; 13:203.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-MM-F1	4	N/A	28.5	a475880937	View

Sequence

>RosBREEDSNP_SNP_CA_32825196_Lg13_02890_MAF10_MDP0000507913_exon1 ID=RosBREEDSNP_SNP_CA_32825196_Lg13_02890_MAF10_MDP0000507913_exon1; Name=RosBREEDSNP_SNP_CA_32825196_Lg13_02890_MAF10_MDP0000507913_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
CCTTTGGGCAGCTCACAAAGGCACAGGGGCACAAAMGGAGAGGAGGAGAA
GAGCTGCTTTGGCAGCGTGA