RosBREEDSNP_SNP_GA_2024247_Lg2_AAT1_MAF50_1670831_exon1, RosBREEDSNP_SNP_GA_2024247_Lg2_AAT1_MAF50_1670831_exon1 (genetic_marker) Malus x domestica

Marker Overview

Name

RosBREEDSNP_SNP_GA_2024247_Lg2_AAT1_MAF50_1670831_exon1

dbSNP ID

SNP Array ID

IRSC 9K SNP array for apple:	RosBREEDSNP_SNP_GA_2024247_Lg2_AAT1_MAF50_1670831_exon1
50K SNP array for apple:	AX-105212672

Type

SNP

SNP Alleles

A/G

5' Flanking Sequence

CAACTCCATTGCACAGAACTGCAAGGAGTAGTCCT

3' Flanking Sequence

CATCTAGTGAAGAAAGCAGCTCCTCAACTTCAGT

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
IRSC 9K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
MDC015780.136	contig	MDC015780.136:1952..1952 .	Malus x domestica Whole Genome v1.0 Assembly & Annotation	n/a
Chr12	chromosome	Chr12:2808048..2808048 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a
Chr12	chromosome	Chr12:2808046..2808046 .	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Analyses

This genetic_marker is derived from or has results from the following analyses


Analysis Name	Date Performed
RosBREED SNP development	2011-01-01

Publications


Year	Publication
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Sequence

>RosBREEDSNP_SNP_GA_2024247_Lg2_AAT1_MAF50_1670831_exon1 ID=RosBREEDSNP_SNP_GA_2024247_Lg2_AAT1_MAF50_1670831_exon1; Name=RosBREEDSNP_SNP_GA_2024247_Lg2_AAT1_MAF50_1670831_exon1; organism=Malus x domestica; type=genetic_marker; length=70bp
CAACTCCATTGCACAGAACTGCAAGGAGTAGTCCTRCATCTAGTGAAGAA
AGCAGCTCCTCAACTTCAGT