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Marker Overview
| Name | Rub_AX-566129721 |
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| dbSNP ID | N/A |
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| SNP Array ID | | 13K SNP Array for Rubus: | Affx-1240512373 | | Red_raspberry-KASP24: | Rub_AX-566129721 | | Red_raspberry-KASP48: | Rub_AX-566129721 |
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| Type | SNP |
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| SNP Alleles | Y |
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| 5' Flanking Sequence | CTACATCTGTTTTCTTCCTCTGATGCTGCAATTGA |
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| 3' Flanking Sequence | TTTTTGGGGCTACTCTCCACTTCTGTCCCTCTTGA |
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| Species | Rubus spp. |
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| Primer 1 | Rub_AX-566129721.KASP_Primer_Allele_C: TTCTTCCTCTGATGCTGCAATTGAC |
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| Primer 2 | Rub_AX-566129721.KASP_Primer_Allele_T: TTTTCTTCCTCTGATGCTGCAATTGAT |
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| Primer 3 | Rub_AX-566129721.KASP_Primer_Common: ACAGAAGTGGAGAGTAGCCCCAAAA |
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| Publication | [view all] |
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| Contact | Sara Montanari
Nahla Bassil
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| Comment | SNP from Rubus occidentalis |
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Libraries
| Library Name | Type |
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| 13K SNP Array for Rubus | SNP_chip |
| Red_raspberry-KASP24 | SNP_chip |
| Red_raspberry-KASP48 | SNP_chip |
Publications
| Year | Publication |
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| 2023 | Montanari S, Deng C, Koot E, Bassil NV, Zurn JD, Morrison-Whittle P, Worthington ML, Aryal R, Ashrafi H, Pradelles J, Wellenreuther M, Chagné D. A multiplexed plant-animal SNP array for selective breeding and species conservation applications. G3 (Bethesda, Md.). 2023 Aug 11. DOI: 10.1093/g3journal/jkad170 |
| 2023 | Clare, S. J., R. M. King, M. Hardigan, M. Dossett, S. Montanari, D. Chagné, C. Ochsenfeld, C. Britton, R. Rapp and N. Bassil "Development of KASP fingerprinting panel for clonal identification in red raspberry (Rubus idaeus L.)." Plant Breeding https://doi.org/10.1111/pbr.13141 |
Sequence
>Rub_AX-566129721 ID=Rub_AX-566129721; Name=Rub_AX-566129721; organism=Rubus spp.; type=genetic_marker; length=71bp
CTACATCTGTTTTCTTCCTCTGATGCTGCAATTGAYTTTTTGGGGCTACT
CTCCACTTCTGTCCCTCTTGA
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