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Marker Overview
Name | Rub_AX-566156635 |
dbSNP ID | N/A |
SNP Array ID | 13K SNP Array for Rubus: | Affx-1240525599 |
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Type | SNP |
SNP Alleles | Y |
5' Flanking Sequence | AATTTGGTAAATTATGGCTCCCTCAGAGCTATGCT |
3' Flanking Sequence | GAAGAAAATGGGTCTATATTTAATACCAGCTCTGA |
Species | Rubus spp. |
Publication | [view all] |
Contact | Sara Montanari
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Comment | SNP from Rubus argutus |
Libraries
Library Name | Type |
13K SNP Array for Rubus | SNP_chip |
Alignments
The following features are aligned
Feature Name | Type | Location | Analysis | Reference |
HiC_scaffold_172 | chromosome | HiC_scaffold_172:49787..49787 . | Rubus argutus Hillquist Genome v1.0 Assembly & Annotation | Montanari S, Deng C, Koot E, Bassil NV, Zurn JD, Morrison-Whittle P, Worthington ML, Aryal R, Ashrafi H, Pradelles J, Wellenreuther M, Chagné D. A multiplexed plant-animal SNP array for selective breeding and species conservation applications.. G3 (Bethesda, Md.). 2023 Aug 11. |
Publications
Year | Publication |
2023 | Montanari S, Deng C, Koot E, Bassil NV, Zurn JD, Morrison-Whittle P, Worthington ML, Aryal R, Ashrafi H, Pradelles J, Wellenreuther M, Chagné D. A multiplexed plant-animal SNP array for selective breeding and species conservation applications. G3 (Bethesda, Md.). 2023 Aug 11. DOI: 10.1093/g3journal/jkad170 |
Sequence
>Rub_AX-566156635 ID=Rub_AX-566156635; Name=Rub_AX-566156635; organism=Rubus spp.; type=genetic_marker; length=71bp AATTTGGTAAATTATGGCTCCCTCAGAGCTATGCTYGAAGAAAATGGGTC TATATTTAATACCAGCTCTGA
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