GWAS0001159 | GDR

Annotated Terms

Genome Location

GWAS Overview


GWAS Label	GWAS0001159 [ MapViewer ]
Published Symbol	Flesh colour
Trait Name	fruit flesh color
Trait Alias	N/A
GWAS Marker	pav_chr3_25100670
GWAS Study	Sweet_cherry_quality_GWAS_Holušová_2023
Genome Assembly	Prunus avium Tieton Genome v2.0 Assembly & Annotation
Statistical Mothod	FarmCPU
Experimental Model	N/A
GWAS Panel	Czech_Republic_sweet_cherry_Holovousy_235
LOD	N/A
P Value	3.7143218528181E-22
R2	N/A
Unique key	3625-Flesh colourpav_chr3_25100670FarmCPU
MAF	0.042735042735043
Allele	T/C
Comments	N/A

Annotated Terms

The following terms have been associated with this GWAS:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
28:fruit flesh color	fruit flesh color

Genome Location


Name	Type	Location	Analysis	MapViewer
chr_3	chromosome	chr_3:25100670..25100670	Prunus avium Tieton Genome v2.0 Assembly & Annotation	View

Publications


Year	Publication
2023	Holušová K, Čmejlová J, Suran P, Čmejla R, Sedlák J, Zelený L, Bartoš J. High-resolution genome-wide association study of a large Czech collection of sweet cherry (Prunus avium L.) on fruit maturity and quality traits.. Horticulture research. 2023; 10(1):uhac233.

Germplasm


Stock Name	Type
Czech_Republic_sweet_cherry_Holovousy_235	panel