GWAS0001241 | GDR

Annotated Terms

Genome Location

GWAS Overview


GWAS Label	GWAS0001241 [ MapViewer ]
Published Symbol	procyanidin B2
Trait Name	procyanidin B2 content
Trait Alias	N/A
GWAS Marker	RosBREEDSNP_SNP_CA_14512918_Lg2_00002_MAF20_577821_exon1
GWAS Study	Apple_phytochemicals_GWAS_Kumar_2022
Genome Assembly	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Statistical Mothod	MLM
Experimental Model	N/A
GWAS Panel	New_Zealand_apples_Hawke's_Bay_344
LOD	N/A
P Value	1.0E-6
R2	N/A
Unique key	3626-procyanidin B2RosBREEDSNP_SNP_CA_14512918_Lg2_00002_MAF20_577821_exon1MLM
Comments	N/A

Annotated Terms

The following terms have been associated with this GWAS:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000201221	procyanidin B2 content

Genome Location


Name	Type	Location	Analysis	MapViewer
MDC009817.314	contig	MDC009817.314:22552..22552	Malus x domestica Whole Genome v1.0 Assembly & Annotation	View
Chr02	chromosome	Chr02:12796369..12796369	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	View

Publications


Year	Publication
2022	Kumar S, Molloy C, Hunt M, Deng CH, Wiedow C, Andre C, Dare A, McGhie T. GWAS provides new insights into the genetic mechanisms of phytochemicals production and red skin colour in apple.. Horticulture research. 2022; 9:uhac218.

Germplasm


Stock Name	Type
New_Zealand_apples_Hawke's_Bay_344	panel