GWAS0001254 | GDR

Annotated Terms

Genome Location

GWAS Overview


GWAS Label	GWAS0001254 [ MapViewer ]
Published Symbol	procyanidin B2
Trait Name	procyanidin B2 content
Trait Alias	N/A
GWAS Marker	RosBREEDSNP_SNP_CT_11411515_Lg2_00159_MAF40_MDP0000320576_exon9
GWAS Study	Apple_phytochemicals_GWAS_Kumar_2022
Genome Assembly	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Statistical Mothod	MLM
Experimental Model	N/A
GWAS Panel	New_Zealand_apples_Hawke's_Bay_344
LOD	N/A
P Value	3.2E-10
R2	N/A
Unique key	3626-procyanidin B2RosBREEDSNP_SNP_CT_11411515_Lg2_00159_MAF40_MDP0000320576_exon9MLM
Comments	N/A

Annotated Terms

The following terms have been associated with this GWAS:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000201221	procyanidin B2 content

Genome Location


Name	Type	Location	Analysis	MapViewer
MDC011279.298	contig	MDC011279.298:9062..9062	Malus x domestica Whole Genome v1.0 Assembly & Annotation	View
Chr02	chromosome	Chr02:10212596..10212596	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	View

Publications


Year	Publication
2022	Kumar S, Molloy C, Hunt M, Deng CH, Wiedow C, Andre C, Dare A, McGhie T. GWAS provides new insights into the genetic mechanisms of phytochemicals production and red skin colour in apple.. Horticulture research. 2022; 9:uhac218.

Germplasm


Stock Name	Type
New_Zealand_apples_Hawke's_Bay_344	panel