GWAS0001268 | GDR

Annotated Terms

Genome Location

GWAS Overview


GWAS Label	GWAS0001268 [ MapViewer ]
Published Symbol	procyanidin C1
Trait Name	unknown procyanidin oligomer 1 content
Trait Alias	N/A
GWAS Marker	RosBREEDSNP_SNP_TG_10518958_Lg3_00194_MAF10_109422_exon1
GWAS Study	Apple_phytochemicals_GWAS_Kumar_2022
Genome Assembly	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
Statistical Mothod	MLM
Experimental Model	N/A
GWAS Panel	New_Zealand_apples_Hawke's_Bay_344
LOD	N/A
P Value	2.1E-7
R2	N/A
Unique key	3626-procyanidin C1RosBREEDSNP_SNP_TG_10518958_Lg3_00194_MAF10_109422_exon1MLM
Comments	N/A

Annotated Terms

The following terms have been associated with this GWAS:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
MAIN:000201216	unknown procyanidin oligomer 1 content

Genome Location


Name	Type	Location	Analysis	MapViewer
MDC016705.70	contig	MDC016705.70:14439..14439	Malus x domestica Whole Genome v1.0 Assembly & Annotation	View
Chr03	chromosome	Chr03:9570018..9570018	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	View

Publications


Year	Publication
2022	Kumar S, Molloy C, Hunt M, Deng CH, Wiedow C, Andre C, Dare A, McGhie T. GWAS provides new insights into the genetic mechanisms of phytochemicals production and red skin colour in apple.. Horticulture research. 2022; 9:uhac218.

Germplasm


Stock Name	Type
New_Zealand_apples_Hawke's_Bay_344	panel