GWAS0001540 | GDR

Annotated Terms

Genome Location

GWAS Overview


GWAS Label	GWAS0001540 [ MapViewer ]
Published Symbol	fruit thickness
Trait Name	fruit thickness
Trait Alias	N/A
GWAS Marker	pav_Rgn_chr2_4882204
GWAS Study	Sweet_cherry_fruit_quality_GWAS_Regina_Donkpegan_2023
Genome Assembly	Prunus avium Regina Genome v1.0 Assembly & Annotation
Statistical Mothod	FarmCPU
Experimental Model	N/A
GWAS Panel	Sweet_cherry_fruit_quality_GWAS_Donkpegan_2023
LOD	N/A
P Value	3.23e−10
R2	7.2
Unique key	3695-fruit thicknesspav_Rgn_chr2_4882204FarmCPU
Effect	−0.68
Allele	A/G
Comments	N/A

Annotated Terms

The following terms have been associated with this GWAS:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
28:fruit thickness	fruit thickness

Genome Location


Name	Type	Location	Analysis	MapViewer
PAV02_REGINA	chromosome	PAV02_REGINA:4882204..4882204	Prunus avium Regina Genome v1.0 Assembly & Annotation	View

Publications


Year	Publication
2023	Donkpegan ASL, Bernard A, Barreneche T, Quero-García J, Bonnet H, Fouché M, Le Dantec L, Wenden B, Dirlewanger E. Genome-wide association mapping in a sweet cherry germplasm collection (Prunus avium L.) reveals candidate genes for fruit quality traits.. Horticulture research. 2023 Oct; 10(10), uhad191.

Germplasm


Stock Name	Type
Sweet_cherry_fruit_quality_GWAS_Donkpegan_2023	panel