GWAS0001920 | GDR

Annotated Terms

Genome Location

GWAS Overview


GWAS Label	GWAS0001920 [ MapViewer ]
Published Symbol	Red pigment in flesh
Trait Name	fruit flesh color
Trait Alias	N/A
GWAS Marker	CPDCT025
GWAS Study	Peach_complex_traits_GWAS_Cao_2012
Genome Assembly	Prunus persica Whole Genome v1.0 Assembly & Annotation
Statistical Mothod	GLM
Experimental Model	N/A
GWAS Panel	Peach_complex_traits_GWAS_Cao_104
LOD	N/A
P Value	N/A
R2	8.1
Unique key	3741-Red pigment in fleshCPDCT025GLM
Comments	N/A

Annotated Terms

The following terms have been associated with this GWAS:

Vocabulary: **Rosaceae Trait Ontology**
Term	Definition
28:fruit flesh color	fruit flesh color

Genome Location


Name	Type	Location	Analysis	MapViewer
scaffold_3	supercontig	scaffold_3:16942524..16942962	Prunus persica Whole Genome v1.0 Assembly & Annotation	View
Pp03	chromosome	Pp03:22285010..22285448	Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)	View
PAV03_REGINA	chromosome	PAV03_REGINA:24372839..24373028	Prunus avium Regina Genome v1.0 Assembly & Annotation	View
chr_3	chromosome	chr_3:29827520..29827709	Prunus avium Tieton Genome v2.0 Assembly & Annotation	View
Pd03	chromosome	Pd03:18101462..18101657	Prunus dulcis Lauranne Genome v1.0	View

Publications


Year	Publication
2012	Cao K, Wang L, Zhu G, Fang W, Chen C, Luo J. Genetic diversity, linkage disequilibrium, and association mapping analyses of peach (Prunus persica) landraces in China. Tree genetics & genomes. 2012; 8(5):975-990.

Germplasm


Stock Name	Type
Peach_complex_traits_GWAS_Cao_104	panel