CHK4A, KM114883.1-CHK4A.m1 (mRNA) Malus x domestica

Transcript Overview


Name	CHK4A
Unique Name	KM114883.1-CHK4A.m1
Type	mRNA
Organism	Malus x domestica (Apple)
Source	genbank
Product	CHASE histidine kinase 4a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KM114883.1-CHK4A.m1-cds1	KM114883.1-CHK4A.m1-cds1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CHK4A	KM114883.1-CHK4A.p1	Malus x domestica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	697761515
nuccore	KM114883.1

Alignments

Feature Name	Type	Location	Analysis
KM114883	region	KM114883:1..3027+	NCBI Rosaceae gene and mRNA sequences
Chr13	chromosome	Chr13:1093337..1097764+	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr13	chromosome	chr13:928738..933163-	Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr13	chromosome	chr13:921073..925498+	Malus x domestica Whole Genome v1.0p Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KM114883:1..3027+
coding sequence from alignment at KM114883:1..3027+

mRNA sequence

>KM114883.1-CHK4A.m1 ID=KM114883.1-CHK4A.m1; Name=CHK4A; organism=Malus x domestica; type=mRNA; length=3027bp
atgggtaaagaggaaacaagaaggaaaatcaaagaaattggtttaatgct
gatggctgggaagatgaagatgaagagccaccactcggtggctgtgaggt
tgaatgagcaaatgggggccaaaaaaggctacacctttgtgcaggctcac
agggcttggttcccaaaacttttccttctttgggttggtgtgatgattct
cttgggctggttaacctacagatacatggatgctgataacaaggtgagaa
gggtagaacttcttggtagcatgtgtgatcagagggcaagaatgctgcag
gatcagttcagtgttagtgttaatcatgtgcatgcccttgcaatccttgt
ttccaccttccattactacaagaacccttcagcaattgatcaggaaacgt
ttgctgaatacactgccagaaccgccttcgagaggcctcttttaagtggg
gtggcctatgcacaaagagtgcgtgattcggatagggaaaagttcgaaaa
cctacatggttggacaataaagacaatggagagggaaccatcgcccatcc
gagatgagtatgcgcctgtaattttttcgcaggaaaccgtctcttacatt
gagtcacttgatatgatgtctggggaggaggacagagaaaacattttgag
ggccagagctactggaaaagctgttctgacaagtccatttaggctgctgg
gttctcatcatcttggtgttgtattgactttccctgtttacaaatcgaag
ctccctgcaaacccaactgtggagcagcgcattcaggcggctgttgggta
ccttggtggtgcctttgatgttgagtccctggtggagaatttgcttggac
aacttgctgggaatcaagccattcaggtttatgtgtatgatgttacaaac
acttctgatcccctaatcatgtatggtcaccaatatcaagatggtgacac
atctcttctgcatgaaagcaagctggattttggagatccattccgaaggc
atcagatgatatgtagatatcatcagacggcacctatgtcatggacagcg
gttaacactgcattcttgttctttgtgattggttttttggttggctatat
cttatatggagcagcaatgcacattgttaaagttgaggatgatttccgtg
aaatggaggaactaaaagttcgagcagaagctgctgatgttgccaagtcc
cagtttcttgctactgtttctcatgaaataagaacgcccatgaatggaat
cctaggaatgcttgccttgcttttagatacagctttaagttcgacccaga
tggattatgctcgaactgctcaagcttgtggaaaggcattgataacatta
attaatgaggtgcttgaccgtgcaaagatagacgctggcaagttagagct
ggaagaagttccatttggcattcggtcgatactagatgatgtcctatctt
tattttctgaaaaaactagaaataagggtatagagctggcagtatttgtt
tccgataaagtcccagaaatttttatgggagatccagggagattcagaca
gataattacaaatctagtgggtaactctattaaattcactgaacgaggac
atatatttgtcaaagtccatctagctgagccctcaaaggtgatgataaat
gggaagtcagagacttacttgaacggaggaccagatgaaggtgtgctgac
atccgatggccatcaatttaaaactttaagtgggtgtgaagcagctaatg
actggaatagttgggatacgtttaagcatctggtgtctgatgaagaatac
agagctgatgttgatgaagcttctgagaaggtcacgttgatggtttctgt
ggaggatacagggattggtataccattaggtgcacaggaacgtgttttta
tgcccttcatgcaggcagacagttcaacttctagacattatggaggaact
ggtattggcttgagcatcagtaagtgtctggttgaactgatgggtggtca
gataaaattcgtaagtcgaccacacattgggagtacattttctttcaccg
ctaattttaggaggtgcaagaaaaatgcatttagtgacatgaaaaaacct
aatcctgaggatctaccttctagtttgagaggattgcgagcaatagtagt
tgatagaaaacttgtgagagctgctgtaaccaaataccacttgaagagac
ttggaatcgttgtggaagttgcgagcagcatcaagatggccgttgcttca
tgtggaagaaatggttctgtggcatccgggaatagtatccagccagatat
agttctagttgagaaggattcatggatttctggtgaagaacatgatctta
atgcgcagaaattggattggaaacagaacggtcatgcatttaagctgcca
aaaatgattcttcttgcaaccaaaaatcttagtcaagctgaatctgataa
tgtaagggcagcaggttttgcggatactgtaatcatgaaacctttgaggg
ctagtatggtggctgcgtgtcttcaagaggtcctgggcataggaaagaag
aggcaaccagggagagtggtgccgaatggatctaacgttctccaaagtct
gctctgtgggaagaaaattttggtggttgatgacaatttggtaaacagga
gagttgctgcaggtgcactaaagaagtttggagctaatgtagagtgtgtt
gatagtggcaaagctgcattggcgttgcttcaattaccgcacaattttga
tgcttgcttcatggatattcaaatgcctgaaatggatgggtttgaggcaa
ctcgcagaatccggcagatggagagcaaggcaaatgttgagatgaatgga
ggatttgaaggactaacaacaaagggtgactggcatttgcctgtgttagc
tatgacagcggacgttattcatgccacctatgatgagtgcctaaagtgtg
ggatggatggatacgtctcaaagcccttcgaggaagagaatctctatcaa
gcagtggccaagttcttcaaaacttaa

protein sequence of CHK4A

>KM114883.1-CHK4A.p1 ID=KM114883.1-CHK4A.p1; Name=CHK4A; organism=Malus x domestica; type=polypeptide; length=1008bp
MGKEETRRKIKEIGLMLMAGKMKMKSHHSVAVRLNEQMGAKKGYTFVQAH
RAWFPKLFLLWVGVMILLGWLTYRYMDADNKVRRVELLGSMCDQRARMLQ
DQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSG
VAYAQRVRDSDREKFENLHGWTIKTMEREPSPIRDEYAPVIFSQETVSYI
ESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSK
LPANPTVEQRIQAAVGYLGGAFDVESLVENLLGQLAGNQAIQVYVYDVTN
TSDPLIMYGHQYQDGDTSLLHESKLDFGDPFRRHQMICRYHQTAPMSWTA
VNTAFLFFVIGFLVGYILYGAAMHIVKVEDDFREMEELKVRAEAADVAKS
QFLATVSHEIRTPMNGILGMLALLLDTALSSTQMDYARTAQACGKALITL
INEVLDRAKIDAGKLELEEVPFGIRSILDDVLSLFSEKTRNKGIELAVFV
SDKVPEIFMGDPGRFRQIITNLVGNSIKFTERGHIFVKVHLAEPSKVMIN
GKSETYLNGGPDEGVLTSDGHQFKTLSGCEAANDWNSWDTFKHLVSDEEY
RADVDEASEKVTLMVSVEDTGIGIPLGAQERVFMPFMQADSSTSRHYGGT
GIGLSISKCLVELMGGQIKFVSRPHIGSTFSFTANFRRCKKNAFSDMKKP
NPEDLPSSLRGLRAIVVDRKLVRAAVTKYHLKRLGIVVEVASSIKMAVAS
CGRNGSVASGNSIQPDIVLVEKDSWISGEEHDLNAQKLDWKQNGHAFKLP
KMILLATKNLSQAESDNVRAAGFADTVIMKPLRASMVAACLQEVLGIGKK
RQPGRVVPNGSNVLQSLLCGKKILVVDDNLVNRRVAAGALKKFGANVECV
DSGKAALALLQLPHNFDACFMDIQMPEMDGFEATRRIRQMESKANVEMNG
GFEGLTTKGDWHLPVLAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQ
AVAKFFKT

mRNA from alignment at KM114883:1..3027+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>KM114883.1-CHK4A.m1 ID=KM114883.1-CHK4A.m1; Name=CHK4A; organism=Malus x domestica; type=mRNA; length=3027bp; location=Sequence derived from: KM114883:1..3027+ (Malus x domestica
atgggtaaagaggaaacaagaaggaaaatcaaagaaattggtttaatgct
gatggctgggaagatgaagatgaagagccaccactcggtggctgtgaggt
tgaatgagcaaatgggggccaaaaaaggctacacctttgtgcaggctcac
agggcttggttcccaaaacttttccttctttgggttggtgtgatgattct
cttgggctggttaacctacagatacatggatgctgataacaaggtgagaa
gggtagaacttcttggtagcatgtgtgatcagagggcaagaatgctgcag
gatcagttcagtgttagtgttaatcatgtgcatgcccttgcaatccttgt
ttccaccttccattactacaagaacccttcagcaattgatcaggaaacgt
ttgctgaatacactgccagaaccgccttcgagaggcctcttttaagtggg
gtggcctatgcacaaagagtgcgtgattcggatagggaaaagttcgaaaa
cctacatggttggacaataaagacaatggagagggaaccatcgcccatcc
gagatgagtatgcgcctgtaattttttcgcaggaaaccgtctcttacatt
gagtcacttgatatgatgtctggggaggaggacagagaaaacattttgag
ggccagagctactggaaaagctgttctgacaagtccatttaggctgctgg
gttctcatcatcttggtgttgtattgactttccctgtttacaaatcgaag
ctccctgcaaacccaactgtggagcagcgcattcaggcggctgttgggta
ccttggtggtgcctttgatgttgagtccctggtggagaatttgcttggac
aacttgctgggaatcaagccattcaggtttatgtgtatgatgttacaaac
acttctgatcccctaatcatgtatggtcaccaatatcaagatggtgacac
atctcttctgcatgaaagcaagctggattttggagatccattccgaaggc
atcagatgatatgtagatatcatcagacggcacctatgtcatggacagcg
gttaacactgcattcttgttctttgtgattggttttttggttggctatat
cttatatggagcagcaatgcacattgttaaagttgaggatgatttccgtg
aaatggaggaactaaaagttcgagcagaagctgctgatgttgccaagtcc
cagtttcttgctactgtttctcatgaaataagaacgcccatgaatggaat
cctaggaatgcttgccttgcttttagatacagctttaagttcgacccaga
tggattatgctcgaactgctcaagcttgtggaaaggcattgataacatta
attaatgaggtgcttgaccgtgcaaagatagacgctggcaagttagagct
ggaagaagttccatttggcattcggtcgatactagatgatgtcctatctt
tattttctgaaaaaactagaaataagggtatagagctggcagtatttgtt
tccgataaagtcccagaaatttttatgggagatccagggagattcagaca
gataattacaaatctagtgggtaactctattaaattcactgaacgaggac
atatatttgtcaaagtccatctagctgagccctcaaaggtgatgataaat
gggaagtcagagacttacttgaacggaggaccagatgaaggtgtgctgac
atccgatggccatcaatttaaaactttaagtgggtgtgaagcagctaatg
actggaatagttgggatacgtttaagcatctggtgtctgatgaagaatac
agagctgatgttgatgaagcttctgagaaggtcacgttgatggtttctgt
ggaggatacagggattggtataccattaggtgcacaggaacgtgttttta
tgcccttcatgcaggcagacagttcaacttctagacattatggaggaact
ggtattggcttgagcatcagtaagtgtctggttgaactgatgggtggtca
gataaaattcgtaagtcgaccacacattgggagtacattttctttcaccg
ctaattttaggaggtgcaagaaaaatgcatttagtgacatgaaaaaacct
aatcctgaggatctaccttctagtttgagaggattgcgagcaatagtagt
tgatagaaaacttgtgagagctgctgtaaccaaataccacttgaagagac
ttggaatcgttgtggaagttgcgagcagcatcaagatggccgttgcttca
tgtggaagaaatggttctgtggcatccgggaatagtatccagccagatat
agttctagttgagaaggattcatggatttctggtgaagaacatgatctta
atgcgcagaaattggattggaaacagaacggtcatgcatttaagctgcca
aaaatgattcttcttgcaaccaaaaatcttagtcaagctgaatctgataa
tgtaagggcagcaggttttgcggatactgtaatcatgaaacctttgaggg
ctagtatggtggctgcgtgtcttcaagaggtcctgggcataggaaagaag
aggcaaccagggagagtggtgccgaatggatctaacgttctccaaagtct
gctctgtgggaagaaaattttggtggttgatgacaatttggtaaacagga
gagttgctgcaggtgcactaaagaagtttggagctaatgtagagtgtgtt
gatagtggcaaagctgcattggcgttgcttcaattaccgcacaattttga
tgcttgcttcatggatattcaaatgcctgaaatggatgggtttgaggcaa
ctcgcagaatccggcagatggagagcaaggcaaatgttgagatgaatgga
ggatttgaaggactaacaacaaagggtgactggcatttgcctgtgttagc
tatgacagcggacgttattcatgccacctatgatgagtgcctaaagtgtg
ggatggatggatacgtctcaaagcccttcgaggaagagaatctctatcaa
gcagtggccaagttcttcaaaacttaa

Coding sequence (CDS) from alignment at KM114883:1..3027+

>KM114883.1-CHK4A.m1 ID=KM114883.1-CHK4A.m1; Name=CHK4A; organism=Malus x domestica; type=CDS; length=3027bp; location=Sequence derived from: KM114883:1..3027+ (Malus x domestica
atgggtaaagaggaaacaagaaggaaaatcaaagaaattggtttaatgct
gatggctgggaagatgaagatgaagagccaccactcggtggctgtgaggt
tgaatgagcaaatgggggccaaaaaaggctacacctttgtgcaggctcac
agggcttggttcccaaaacttttccttctttgggttggtgtgatgattct
cttgggctggttaacctacagatacatggatgctgataacaaggtgagaa
gggtagaacttcttggtagcatgtgtgatcagagggcaagaatgctgcag
gatcagttcagtgttagtgttaatcatgtgcatgcccttgcaatccttgt
ttccaccttccattactacaagaacccttcagcaattgatcaggaaacgt
ttgctgaatacactgccagaaccgccttcgagaggcctcttttaagtggg
gtggcctatgcacaaagagtgcgtgattcggatagggaaaagttcgaaaa
cctacatggttggacaataaagacaatggagagggaaccatcgcccatcc
gagatgagtatgcgcctgtaattttttcgcaggaaaccgtctcttacatt
gagtcacttgatatgatgtctggggaggaggacagagaaaacattttgag
ggccagagctactggaaaagctgttctgacaagtccatttaggctgctgg
gttctcatcatcttggtgttgtattgactttccctgtttacaaatcgaag
ctccctgcaaacccaactgtggagcagcgcattcaggcggctgttgggta
ccttggtggtgcctttgatgttgagtccctggtggagaatttgcttggac
aacttgctgggaatcaagccattcaggtttatgtgtatgatgttacaaac
acttctgatcccctaatcatgtatggtcaccaatatcaagatggtgacac
atctcttctgcatgaaagcaagctggattttggagatccattccgaaggc
atcagatgatatgtagatatcatcagacggcacctatgtcatggacagcg
gttaacactgcattcttgttctttgtgattggttttttggttggctatat
cttatatggagcagcaatgcacattgttaaagttgaggatgatttccgtg
aaatggaggaactaaaagttcgagcagaagctgctgatgttgccaagtcc
cagtttcttgctactgtttctcatgaaataagaacgcccatgaatggaat
cctaggaatgcttgccttgcttttagatacagctttaagttcgacccaga
tggattatgctcgaactgctcaagcttgtggaaaggcattgataacatta
attaatgaggtgcttgaccgtgcaaagatagacgctggcaagttagagct
ggaagaagttccatttggcattcggtcgatactagatgatgtcctatctt
tattttctgaaaaaactagaaataagggtatagagctggcagtatttgtt
tccgataaagtcccagaaatttttatgggagatccagggagattcagaca
gataattacaaatctagtgggtaactctattaaattcactgaacgaggac
atatatttgtcaaagtccatctagctgagccctcaaaggtgatgataaat
gggaagtcagagacttacttgaacggaggaccagatgaaggtgtgctgac
atccgatggccatcaatttaaaactttaagtgggtgtgaagcagctaatg
actggaatagttgggatacgtttaagcatctggtgtctgatgaagaatac
agagctgatgttgatgaagcttctgagaaggtcacgttgatggtttctgt
ggaggatacagggattggtataccattaggtgcacaggaacgtgttttta
tgcccttcatgcaggcagacagttcaacttctagacattatggaggaact
ggtattggcttgagcatcagtaagtgtctggttgaactgatgggtggtca
gataaaattcgtaagtcgaccacacattgggagtacattttctttcaccg
ctaattttaggaggtgcaagaaaaatgcatttagtgacatgaaaaaacct
aatcctgaggatctaccttctagtttgagaggattgcgagcaatagtagt
tgatagaaaacttgtgagagctgctgtaaccaaataccacttgaagagac
ttggaatcgttgtggaagttgcgagcagcatcaagatggccgttgcttca
tgtggaagaaatggttctgtggcatccgggaatagtatccagccagatat
agttctagttgagaaggattcatggatttctggtgaagaacatgatctta
atgcgcagaaattggattggaaacagaacggtcatgcatttaagctgcca
aaaatgattcttcttgcaaccaaaaatcttagtcaagctgaatctgataa
tgtaagggcagcaggttttgcggatactgtaatcatgaaacctttgaggg
ctagtatggtggctgcgtgtcttcaagaggtcctgggcataggaaagaag
aggcaaccagggagagtggtgccgaatggatctaacgttctccaaagtct
gctctgtgggaagaaaattttggtggttgatgacaatttggtaaacagga
gagttgctgcaggtgcactaaagaagtttggagctaatgtagagtgtgtt
gatagtggcaaagctgcattggcgttgcttcaattaccgcacaattttga
tgcttgcttcatggatattcaaatgcctgaaatggatgggtttgaggcaa
ctcgcagaatccggcagatggagagcaaggcaaatgttgagatgaatgga
ggatttgaaggactaacaacaaagggtgactggcatttgcctgtgttagc
tatgacagcggacgttattcatgccacctatgatgagtgcctaaagtgtg
ggatggatggatacgtctcaaagcccttcgaggaagagaatctctatcaa
gcagtggccaagttcttcaaaacttaa