CHK3B, KM114881.1-CHK3B.m1 (mRNA) Malus x domestica

Transcript Overview


Name	CHK3B
Unique Name	KM114881.1-CHK3B.m1
Type	mRNA
Organism	Malus x domestica (Apple)
Source	genbank
Product	CHASE histidine kinase 3b

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KM114881.1-CHK3B.m1-cds1	KM114881.1-CHK3B.m1-cds1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CHK3B	KM114881.1-CHK3B.p1	Malus x domestica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	697761504
nuccore	KM114881.1

Alignments

Feature Name	Type	Location	Analysis
KM114881	region	KM114881:1..3120+	NCBI Rosaceae gene and mRNA sequences
Chr13	chromosome	Chr13:8884190..8889027+	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr13	chromosome	chr13:8384229..8389066-	Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr13	chromosome	chr13:8401167..8406004+	Malus x domestica Whole Genome v1.0p Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KM114881:1..3120+
coding sequence from alignment at KM114881:1..3120+

mRNA sequence

>KM114881.1-CHK3B.m1 ID=KM114881.1-CHK3B.m1; Name=CHK3B; organism=Malus x domestica; type=mRNA; length=3120bp
atgagtgttttccatgtatttgggttcggtttaaaggtggggcatctgct
ttggatgctatgttgctggattgtatctgtaatttccatgaactggtacc
tcactggtgggattgtgacagacaccaaggcaggattgcttggtgaagct
gccaatatgtgcctcaaatggtgggagaaaatcccaatgaacatctgcaa
gatccgctaccattactaccagtatatcgggtcgaagagagtccgaaaaa
ggtggtggaaggggcttttgtttacgtgggtggttggatggacaattggg
agcctctggatcttgtggtacatgagctcacaggctagtgagaagaggaa
ggagactcttgcaagtatgtgtgatgagagggctaggatgttgcaggatc
agtttaatgtcagcatgaaccatattcaggccatgtcgatactgatctcg
acattccaccacgggaagtacccgtctgccattgatcagaaaacttttgc
gcggtacactgaaagaactgcttttgagagacccctcacaagtggcgtgg
catatgctgcaagggtgctccacttggaaaaggaacaatttgagaagcag
cagggctggactataaagagaatggataccctcgaacaaaaccaggttca
taagaatgactatgccccagaagccttggaaccatccccagttcaggaag
aatatgctcctgttatctttgcacaggataccgttagacacatcatctct
tacgatatgctgaccgggaaggaagatcgacaaaacgtgttgcgtgctag
agaatcaggaaagggggttctaactgctccttttcggttgcttaaaacaa
accgccttggagtaatactgacatttgctgtctacaaaagagatctgccc
tcaaatgcaactccaaatgaaagaattcaagcaactgacgggtatctcgg
tggaatctttcatattgagtcacttgtggagaagttacttcaacaacttg
ctagcaagcaaaccatccttgtgaacgtgtatgacactaccaatcagtcg
catccaatcagcatgtatggttcaaatgtttcagatgatggattgcagca
cataagctccttaagttttggagatcccttaaggaaccatgagatgcggt
gcaggttcaaacataagccaccatggccgtggttagccattacaacttct
tttggaatcctcgtgattgcatttcttgttggatacattttccatgcaac
tgtaaataggattgccaaagtggaggatgatttccgtaagatgatggagc
tcaagaaacaggctgaggcagctgatgttgccaaatctcagtttcttgca
actgtttcgcacgagatcagaaccccgatgaatggtgtcctaggaatgtt
acatatgctaatggacacaaatctggatgttactcaactagattatgtcc
gaactgcccagggaagtggaaaagctcttgtctcacttataaatgaggtg
ttggaccaggcaaagattgactctggtaagctggagcttgaggcgttgcg
ttttgatctgcgagctattctggatgatgttttgtcactcttttcaggga
agtctcaagaaaaaggagtagagttggcagtatacatctcagatcaggtt
cctgatatgcttattggtgatcccggaaggtttcggcagattatcaccaa
tctcattgggaattcaatcaaattcacagagaaaggacacatctttgtca
cggttcatcttgtcgaggagctgattggctcgatagatgttgagactgaa
tcatcatcgaagaacaccttgagcggtttccctgtagcagatagacgccg
cagttggggaggatttaggtgttttggtcaagatggatcgacgaaccaat
tctcatcctctgacctcatcaatattattgtatctgttgaggacacagga
gtaggaatccctctagaagcacaatctcgtgttttcactccttttatgca
ggtgggaccatccatctcacgtacacatggaggcacaggaattgggctaa
gcataagcaagtgtttggttggcctcatgaaaggggaaatcgggtttgtg
agcattcccaagattggttccacttttacatttactgctgttttcaccaa
tgtcagctccaattcaaacgagttaacaatccagcaaatgaacagccagt
caaatgctgcatcctcagaatttaatggcatgacggcattagtagtggac
caaagacctgttagagccaagatgtcaagatatcatatccaacggcttgg
aatttgtgttgaagtagtttctgatttgaatcagggtttatctagcataa
tctctgggaataccaccatcaatatggtccttgttgaacaggaagtctgg
gacaaagattcgagcacctcagctctctttgtcaataatttacggaaaat
tgatggacaggttcctctaaaactgttcattctcaccaattctataagct
catgcagaataagttctgcaacttcaggtgtctctaccccaactgtcatc
atgaagcctctcagggcaagcatgcttgctgcctcactacaacgagccat
gggagttggtaacaagggaaatctccggaatggggacctcccaagtttgt
ctctccgcaatcttctgctcgggagaaaaattcttattatagatgataat
aatgtgaatctcagagtagctgctggtgctttgaagaagtatggggctga
ggtggtctgtgcagacagtggtaaaaaggccatctcactgcttacgccgc
cccaccattttgatgcctgcttcatggatatccagatgccagagatggac
gggtttgaagctacaaggagaatacgcaacatggaatgcaatatcagtaa
ccatattcagcatggcgaagtttctgcagaggattatgaaaatattcaag
catggcatgtacccattctggccatgactgcagacgtaattcaggcaacc
catgaggaatgtacaaggtgcggaatggatggatatgtttcaaaaccatt
cgaagctgaacagctttatcgcgaagtttcacgttttttccaatctacaa
caactgggagcttggagtga

protein sequence of CHK3B

>KM114881.1-CHK3B.p1 ID=KM114881.1-CHK3B.p1; Name=CHK3B; organism=Malus x domestica; type=polypeptide; length=1039bp
MSVFHVFGFGLKVGHLLWMLCCWIVSVISMNWYLTGGIVTDTKAGLLGEA
ANMCLKWWEKIPMNICKIRYHYYQYIGSKRVRKRWWKGLLFTWVVGWTIG
SLWILWYMSSQASEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILIS
TFHHGKYPSAIDQKTFARYTERTAFERPLTSGVAYAARVLHLEKEQFEKQ
QGWTIKRMDTLEQNQVHKNDYAPEALEPSPVQEEYAPVIFAQDTVRHIIS
YDMLTGKEDRQNVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLP
SNATPNERIQATDGYLGGIFHIESLVEKLLQQLASKQTILVNVYDTTNQS
HPISMYGSNVSDDGLQHISSLSFGDPLRNHEMRCRFKHKPPWPWLAITTS
FGILVIAFLVGYIFHATVNRIAKVEDDFRKMMELKKQAEAADVAKSQFLA
TVSHEIRTPMNGVLGMLHMLMDTNLDVTQLDYVRTAQGSGKALVSLINEV
LDQAKIDSGKLELEALRFDLRAILDDVLSLFSGKSQEKGVELAVYISDQV
PDMLIGDPGRFRQIITNLIGNSIKFTEKGHIFVTVHLVEELIGSIDVETE
SSSKNTLSGFPVADRRRSWGGFRCFGQDGSTNQFSSSDLINIIVSVEDTG
VGIPLEAQSRVFTPFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGFV
SIPKIGSTFTFTAVFTNVSSNSNELTIQQMNSQSNAASSEFNGMTALVVD
QRPVRAKMSRYHIQRLGICVEVVSDLNQGLSSIISGNTTINMVLVEQEVW
DKDSSTSALFVNNLRKIDGQVPLKLFILTNSISSCRISSATSGVSTPTVI
MKPLRASMLAASLQRAMGVGNKGNLRNGDLPSLSLRNLLLGRKILIIDDN
NVNLRVAAGALKKYGAEVVCADSGKKAISLLTPPHHFDACFMDIQMPEMD
GFEATRRIRNMECNISNHIQHGEVSAEDYENIQAWHVPILAMTADVIQAT
HEECTRCGMDGYVSKPFEAEQLYREVSRFFQSTTTGSLE

mRNA from alignment at KM114881:1..3120+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>KM114881.1-CHK3B.m1 ID=KM114881.1-CHK3B.m1; Name=CHK3B; organism=Malus x domestica; type=mRNA; length=3120bp; location=Sequence derived from: KM114881:1..3120+ (Malus x domestica
atgagtgttttccatgtatttgggttcggtttaaaggtggggcatctgct
ttggatgctatgttgctggattgtatctgtaatttccatgaactggtacc
tcactggtgggattgtgacagacaccaaggcaggattgcttggtgaagct
gccaatatgtgcctcaaatggtgggagaaaatcccaatgaacatctgcaa
gatccgctaccattactaccagtatatcgggtcgaagagagtccgaaaaa
ggtggtggaaggggcttttgtttacgtgggtggttggatggacaattggg
agcctctggatcttgtggtacatgagctcacaggctagtgagaagaggaa
ggagactcttgcaagtatgtgtgatgagagggctaggatgttgcaggatc
agtttaatgtcagcatgaaccatattcaggccatgtcgatactgatctcg
acattccaccacgggaagtacccgtctgccattgatcagaaaacttttgc
gcggtacactgaaagaactgcttttgagagacccctcacaagtggcgtgg
catatgctgcaagggtgctccacttggaaaaggaacaatttgagaagcag
cagggctggactataaagagaatggataccctcgaacaaaaccaggttca
taagaatgactatgccccagaagccttggaaccatccccagttcaggaag
aatatgctcctgttatctttgcacaggataccgttagacacatcatctct
tacgatatgctgaccgggaaggaagatcgacaaaacgtgttgcgtgctag
agaatcaggaaagggggttctaactgctccttttcggttgcttaaaacaa
accgccttggagtaatactgacatttgctgtctacaaaagagatctgccc
tcaaatgcaactccaaatgaaagaattcaagcaactgacgggtatctcgg
tggaatctttcatattgagtcacttgtggagaagttacttcaacaacttg
ctagcaagcaaaccatccttgtgaacgtgtatgacactaccaatcagtcg
catccaatcagcatgtatggttcaaatgtttcagatgatggattgcagca
cataagctccttaagttttggagatcccttaaggaaccatgagatgcggt
gcaggttcaaacataagccaccatggccgtggttagccattacaacttct
tttggaatcctcgtgattgcatttcttgttggatacattttccatgcaac
tgtaaataggattgccaaagtggaggatgatttccgtaagatgatggagc
tcaagaaacaggctgaggcagctgatgttgccaaatctcagtttcttgca
actgtttcgcacgagatcagaaccccgatgaatggtgtcctaggaatgtt
acatatgctaatggacacaaatctggatgttactcaactagattatgtcc
gaactgcccagggaagtggaaaagctcttgtctcacttataaatgaggtg
ttggaccaggcaaagattgactctggtaagctggagcttgaggcgttgcg
ttttgatctgcgagctattctggatgatgttttgtcactcttttcaggga
agtctcaagaaaaaggagtagagttggcagtatacatctcagatcaggtt
cctgatatgcttattggtgatcccggaaggtttcggcagattatcaccaa
tctcattgggaattcaatcaaattcacagagaaaggacacatctttgtca
cggttcatcttgtcgaggagctgattggctcgatagatgttgagactgaa
tcatcatcgaagaacaccttgagcggtttccctgtagcagatagacgccg
cagttggggaggatttaggtgttttggtcaagatggatcgacgaaccaat
tctcatcctctgacctcatcaatattattgtatctgttgaggacacagga
gtaggaatccctctagaagcacaatctcgtgttttcactccttttatgca
ggtgggaccatccatctcacgtacacatggaggcacaggaattgggctaa
gcataagcaagtgtttggttggcctcatgaaaggggaaatcgggtttgtg
agcattcccaagattggttccacttttacatttactgctgttttcaccaa
tgtcagctccaattcaaacgagttaacaatccagcaaatgaacagccagt
caaatgctgcatcctcagaatttaatggcatgacggcattagtagtggac
caaagacctgttagagccaagatgtcaagatatcatatccaacggcttgg
aatttgtgttgaagtagtttctgatttgaatcagggtttatctagcataa
tctctgggaataccaccatcaatatggtccttgttgaacaggaagtctgg
gacaaagattcgagcacctcagctctctttgtcaataatttacggaaaat
tgatggacaggttcctctaaaactgttcattctcaccaattctataagct
catgcagaataagttctgcaacttcaggtgtctctaccccaactgtcatc
atgaagcctctcagggcaagcatgcttgctgcctcactacaacgagccat
gggagttggtaacaagggaaatctccggaatggggacctcccaagtttgt
ctctccgcaatcttctgctcgggagaaaaattcttattatagatgataat
aatgtgaatctcagagtagctgctggtgctttgaagaagtatggggctga
ggtggtctgtgcagacagtggtaaaaaggccatctcactgcttacgccgc
cccaccattttgatgcctgcttcatggatatccagatgccagagatggac
gggtttgaagctacaaggagaatacgcaacatggaatgcaatatcagtaa
ccatattcagcatggcgaagtttctgcagaggattatgaaaatattcaag
catggcatgtacccattctggccatgactgcagacgtaattcaggcaacc
catgaggaatgtacaaggtgcggaatggatggatatgtttcaaaaccatt
cgaagctgaacagctttatcgcgaagtttcacgttttttccaatctacaa
caactgggagcttggagtga

Coding sequence (CDS) from alignment at KM114881:1..3120+

>KM114881.1-CHK3B.m1 ID=KM114881.1-CHK3B.m1; Name=CHK3B; organism=Malus x domestica; type=CDS; length=3120bp; location=Sequence derived from: KM114881:1..3120+ (Malus x domestica
atgagtgttttccatgtatttgggttcggtttaaaggtggggcatctgct
ttggatgctatgttgctggattgtatctgtaatttccatgaactggtacc
tcactggtgggattgtgacagacaccaaggcaggattgcttggtgaagct
gccaatatgtgcctcaaatggtgggagaaaatcccaatgaacatctgcaa
gatccgctaccattactaccagtatatcgggtcgaagagagtccgaaaaa
ggtggtggaaggggcttttgtttacgtgggtggttggatggacaattggg
agcctctggatcttgtggtacatgagctcacaggctagtgagaagaggaa
ggagactcttgcaagtatgtgtgatgagagggctaggatgttgcaggatc
agtttaatgtcagcatgaaccatattcaggccatgtcgatactgatctcg
acattccaccacgggaagtacccgtctgccattgatcagaaaacttttgc
gcggtacactgaaagaactgcttttgagagacccctcacaagtggcgtgg
catatgctgcaagggtgctccacttggaaaaggaacaatttgagaagcag
cagggctggactataaagagaatggataccctcgaacaaaaccaggttca
taagaatgactatgccccagaagccttggaaccatccccagttcaggaag
aatatgctcctgttatctttgcacaggataccgttagacacatcatctct
tacgatatgctgaccgggaaggaagatcgacaaaacgtgttgcgtgctag
agaatcaggaaagggggttctaactgctccttttcggttgcttaaaacaa
accgccttggagtaatactgacatttgctgtctacaaaagagatctgccc
tcaaatgcaactccaaatgaaagaattcaagcaactgacgggtatctcgg
tggaatctttcatattgagtcacttgtggagaagttacttcaacaacttg
ctagcaagcaaaccatccttgtgaacgtgtatgacactaccaatcagtcg
catccaatcagcatgtatggttcaaatgtttcagatgatggattgcagca
cataagctccttaagttttggagatcccttaaggaaccatgagatgcggt
gcaggttcaaacataagccaccatggccgtggttagccattacaacttct
tttggaatcctcgtgattgcatttcttgttggatacattttccatgcaac
tgtaaataggattgccaaagtggaggatgatttccgtaagatgatggagc
tcaagaaacaggctgaggcagctgatgttgccaaatctcagtttcttgca
actgtttcgcacgagatcagaaccccgatgaatggtgtcctaggaatgtt
acatatgctaatggacacaaatctggatgttactcaactagattatgtcc
gaactgcccagggaagtggaaaagctcttgtctcacttataaatgaggtg
ttggaccaggcaaagattgactctggtaagctggagcttgaggcgttgcg
ttttgatctgcgagctattctggatgatgttttgtcactcttttcaggga
agtctcaagaaaaaggagtagagttggcagtatacatctcagatcaggtt
cctgatatgcttattggtgatcccggaaggtttcggcagattatcaccaa
tctcattgggaattcaatcaaattcacagagaaaggacacatctttgtca
cggttcatcttgtcgaggagctgattggctcgatagatgttgagactgaa
tcatcatcgaagaacaccttgagcggtttccctgtagcagatagacgccg
cagttggggaggatttaggtgttttggtcaagatggatcgacgaaccaat
tctcatcctctgacctcatcaatattattgtatctgttgaggacacagga
gtaggaatccctctagaagcacaatctcgtgttttcactccttttatgca
ggtgggaccatccatctcacgtacacatggaggcacaggaattgggctaa
gcataagcaagtgtttggttggcctcatgaaaggggaaatcgggtttgtg
agcattcccaagattggttccacttttacatttactgctgttttcaccaa
tgtcagctccaattcaaacgagttaacaatccagcaaatgaacagccagt
caaatgctgcatcctcagaatttaatggcatgacggcattagtagtggac
caaagacctgttagagccaagatgtcaagatatcatatccaacggcttgg
aatttgtgttgaagtagtttctgatttgaatcagggtttatctagcataa
tctctgggaataccaccatcaatatggtccttgttgaacaggaagtctgg
gacaaagattcgagcacctcagctctctttgtcaataatttacggaaaat
tgatggacaggttcctctaaaactgttcattctcaccaattctataagct
catgcagaataagttctgcaacttcaggtgtctctaccccaactgtcatc
atgaagcctctcagggcaagcatgcttgctgcctcactacaacgagccat
gggagttggtaacaagggaaatctccggaatggggacctcccaagtttgt
ctctccgcaatcttctgctcgggagaaaaattcttattatagatgataat
aatgtgaatctcagagtagctgctggtgctttgaagaagtatggggctga
ggtggtctgtgcagacagtggtaaaaaggccatctcactgcttacgccgc
cccaccattttgatgcctgcttcatggatatccagatgccagagatggac
gggtttgaagctacaaggagaatacgcaacatggaatgcaatatcagtaa
ccatattcagcatggcgaagtttctgcagaggattatgaaaatattcaag
catggcatgtacccattctggccatgactgcagacgtaattcaggcaacc
catgaggaatgtacaaggtgcggaatggatggatatgtttcaaaaccatt
cgaagctgaacagctttatcgcgaagtttcacgttttttccaatctacaa
caactgggagcttggagtga