CHK3A, KM114880.1-CHK3A.m1 (mRNA) Malus x domestica

Transcript Overview


Name	CHK3A
Unique Name	KM114880.1-CHK3A.m1
Type	mRNA
Organism	Malus x domestica (Apple)
Source	genbank
Product	CHASE histidine kinase 3a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KM114880.1-CHK3A.m1-cds1	KM114880.1-CHK3A.m1-cds1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CHK3A	KM114880.1-CHK3A.p1	Malus x domestica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	697761499
nuccore	KM114880.1

Alignments

Feature Name	Type	Location	Analysis
KM114880	region	KM114880:1..3081+	NCBI Rosaceae gene and mRNA sequences
Chr16	chromosome	Chr16:8701731..8706673+	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr16	chromosome	chr16:6459592..6464534-	Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr16	chromosome	chr16:6447700..6452642+	Malus x domestica Whole Genome v1.0p Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KM114880:1..3081+
coding sequence from alignment at KM114880:1..3081+

mRNA sequence

>KM114880.1-CHK3A.m1 ID=KM114880.1-CHK3A.m1; Name=CHK3A; organism=Malus x domestica; type=mRNA; length=3081bp
atgagtttattccatgtatttgggttcggtttaaaggtggggcatctgct
ttggatgctatgttgctggattgtatctgtaatttccatgaactggtacc
tcactggtgggattgtgacagacaccaaggtaggtttgcttggtgaagct
gccaatatgtgcctcaaatggtgggagaaaatcccaatgaacatcagcaa
gatccgccaccattactaccagtatatcgggtcgaagagagtccgaaaaa
cgtggtggaggaggcttttgttttcgtgggtggttgggtggacaattggg
agcctctggatcttgtggtacatgagctcacaggccagtgagaagaggaa
ggagactcttgcaagtatgtgtgatgaaagggcgaggatgttgcaggatc
agtttaatgtcagcatgaaccatatccaggccatgtcgatactgatctca
acattccaccacggaaagtatccatcggccattgatcagaaaacttttgc
gcggtacactgaaagaactgctttcgagagacccctcacaagtggcgtgg
catatgctgtaagggtgctccactcggaaaaggaacaatttgagaagcaa
cagggctggactatcaagagaatggataccctcgaacagaaccaggttca
taagaatgactatgccccagaggccttggaaccttccccagttcaggaag
aatatgctcctgttatctttgcacaggataccgttagacatgtcatctct
tttgatatgctgaccggaaaggaagatcgacaaaatgtgttgcgtgcaag
agaatcgggaaagggggttcttactgctccttttcggctgcttaaaacaa
acagacttggagtaatactgacatttgctgtctacaaaagagatctgccc
tcaaatgcaactccaaacgaaagaattcaggcgactgatgggtatctcgg
tggaatctttcatattgagtcactagtggagaagttacttcaacaactcg
ctagcaagcaaaccatccttgtggacgtgtatgatactaccaatcagtcg
catccaatcagcatgtacggttcaaatgtttcagatgatggattgcagca
cgtcagctccttaagttttggagatcccttaaggaaccatgagatgcggt
gcaggttcaaacagaagccaccttggccgtggttagccattacaacttct
attgggatccttgtgattgcattgcttgttggctacattttccatgcaac
tgtaaataggattgccaaagtggaggatgatttccataagatgatggaac
tcaagaaacaggccgaggcagctgatgttgccaaatctcagtttcttgca
actgtttcacacgagatcagaaccccaatgaatggtgtcctaggaatgtt
acacatgctaatggacacaaacctggatgttactcaactagattatgtcc
gaactgcccagggaagtggaaaagctctagtctcacttataaatgaggta
ttggaccaggcaaagattgaatctggtaagctggagcttgaggcagtgcg
ttttgatctgcgagctattctggatgatgttttgtcactcttttcgggga
agtctcaacaaaaaggagtagagttggcagtatacatctcagatcaggtt
cctgatatgcttattggtgatcccggacggtttaggcagattatcactaa
tctcatggggaattcaatcaaattcacagagaaaggacacatctttgtga
cggttcatcttgtcgaggagctgatcggctcaataggcgttgagaccgaa
tcatcatccaagaacactttgagtggtttccccgttgcagataaacaccg
cagttggggaggatttaggtgtttcggtcaagatggatctgcaagccgtt
tttcatcctcatctgacctcatcaatattattgtatctgttgaggacaca
ggagtaggaatccctctagaagcccaatctcgtgttttcactccttttat
gcaggtgggaccatccatctcacgtacacatggaggcacaggaattggac
taagcataagcaagtgtttggttggcctcatgaaaggggaaatcgggttt
gttagcattccgaagattggttccacatttacatttactgctgttttcac
caatgccagctccagttcaaatgagttaaccatcgagcaaatcaacagcc
agtcaaatgctgcatcctcagaatttaatggcatgacggcattagtagtg
gaccaaagacctgttagggccaagatgtcaagttatcatatcgaacggct
tggaattcgtgttgaagtagtttctgatttgaatcagggtttagctagca
taagctgtgggagtacaactatcaatatggtccttgttgaacaggaagtc
tggaataaagattctggaacttcagctctctttgtcagtaatttacggaa
aattgatggacaggttcctccaaaactgttcattcttgccaattctagta
gctcatgcagaataagctctgcaacttcaggtgtctctaccccaaccgtt
atcatgaaaccgctcagggcaagcatgctcgctgcctcactgcaaagagc
catgggagttggtaacaagggaaatctccggaatggggagctcccaagtt
tgtctctccgcaatcttctgctcggaaggaaaattcttattatagatgat
aataatgtgaatctcagagtagctgccggtgctttgaaaaagtatggggc
agaggtgatctgtgcagacagtggtaaaaaggcaatctcactgcttacgc
cgccccaccattttgatgcctgcttcatggatatccagatgccagagatg
gatgggtttgaagctacaaggagaatacgtgacttagaacgcaatatcag
caacagtattcaagcatggcatgtacccattctggccatgactgctgatg
taattcaggcaacccatgaggaatgcacaaagtgcggaatggatggatat
gtttcaaaaccattcgaagctgaacagctttatcgcgaagtttcacgttt
tttccaatctactacaactggaaacgcgtag

protein sequence of CHK3A

>KM114880.1-CHK3A.p1 ID=KM114880.1-CHK3A.p1; Name=CHK3A; organism=Malus x domestica; type=polypeptide; length=1026bp
MSLFHVFGFGLKVGHLLWMLCCWIVSVISMNWYLTGGIVTDTKVGLLGEA
ANMCLKWWEKIPMNISKIRHHYYQYIGSKRVRKTWWRRLLFSWVVGWTIG
SLWILWYMSSQASEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILIS
TFHHGKYPSAIDQKTFARYTERTAFERPLTSGVAYAVRVLHSEKEQFEKQ
QGWTIKRMDTLEQNQVHKNDYAPEALEPSPVQEEYAPVIFAQDTVRHVIS
FDMLTGKEDRQNVLRARESGKGVLTAPFRLLKTNRLGVILTFAVYKRDLP
SNATPNERIQATDGYLGGIFHIESLVEKLLQQLASKQTILVDVYDTTNQS
HPISMYGSNVSDDGLQHVSSLSFGDPLRNHEMRCRFKQKPPWPWLAITTS
IGILVIALLVGYIFHATVNRIAKVEDDFHKMMELKKQAEAADVAKSQFLA
TVSHEIRTPMNGVLGMLHMLMDTNLDVTQLDYVRTAQGSGKALVSLINEV
LDQAKIESGKLELEAVRFDLRAILDDVLSLFSGKSQQKGVELAVYISDQV
PDMLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVHLVEELIGSIGVETE
SSSKNTLSGFPVADKHRSWGGFRCFGQDGSASRFSSSSDLINIIVSVEDT
GVGIPLEAQSRVFTPFMQVGPSISRTHGGTGIGLSISKCLVGLMKGEIGF
VSIPKIGSTFTFTAVFTNASSSSNELTIEQINSQSNAASSEFNGMTALVV
DQRPVRAKMSSYHIERLGIRVEVVSDLNQGLASISCGSTTINMVLVEQEV
WNKDSGTSALFVSNLRKIDGQVPPKLFILANSSSSCRISSATSGVSTPTV
IMKPLRASMLAASLQRAMGVGNKGNLRNGELPSLSLRNLLLGRKILIIDD
NNVNLRVAAGALKKYGAEVICADSGKKAISLLTPPHHFDACFMDIQMPEM
DGFEATRRIRDLERNISNSIQAWHVPILAMTADVIQATHEECTKCGMDGY
VSKPFEAEQLYREVSRFFQSTTTGNA

mRNA from alignment at KM114880:1..3081+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>KM114880.1-CHK3A.m1 ID=KM114880.1-CHK3A.m1; Name=CHK3A; organism=Malus x domestica; type=mRNA; length=3081bp; location=Sequence derived from: KM114880:1..3081+ (Malus x domestica
atgagtttattccatgtatttgggttcggtttaaaggtggggcatctgct
ttggatgctatgttgctggattgtatctgtaatttccatgaactggtacc
tcactggtgggattgtgacagacaccaaggtaggtttgcttggtgaagct
gccaatatgtgcctcaaatggtgggagaaaatcccaatgaacatcagcaa
gatccgccaccattactaccagtatatcgggtcgaagagagtccgaaaaa
cgtggtggaggaggcttttgttttcgtgggtggttgggtggacaattggg
agcctctggatcttgtggtacatgagctcacaggccagtgagaagaggaa
ggagactcttgcaagtatgtgtgatgaaagggcgaggatgttgcaggatc
agtttaatgtcagcatgaaccatatccaggccatgtcgatactgatctca
acattccaccacggaaagtatccatcggccattgatcagaaaacttttgc
gcggtacactgaaagaactgctttcgagagacccctcacaagtggcgtgg
catatgctgtaagggtgctccactcggaaaaggaacaatttgagaagcaa
cagggctggactatcaagagaatggataccctcgaacagaaccaggttca
taagaatgactatgccccagaggccttggaaccttccccagttcaggaag
aatatgctcctgttatctttgcacaggataccgttagacatgtcatctct
tttgatatgctgaccggaaaggaagatcgacaaaatgtgttgcgtgcaag
agaatcgggaaagggggttcttactgctccttttcggctgcttaaaacaa
acagacttggagtaatactgacatttgctgtctacaaaagagatctgccc
tcaaatgcaactccaaacgaaagaattcaggcgactgatgggtatctcgg
tggaatctttcatattgagtcactagtggagaagttacttcaacaactcg
ctagcaagcaaaccatccttgtggacgtgtatgatactaccaatcagtcg
catccaatcagcatgtacggttcaaatgtttcagatgatggattgcagca
cgtcagctccttaagttttggagatcccttaaggaaccatgagatgcggt
gcaggttcaaacagaagccaccttggccgtggttagccattacaacttct
attgggatccttgtgattgcattgcttgttggctacattttccatgcaac
tgtaaataggattgccaaagtggaggatgatttccataagatgatggaac
tcaagaaacaggccgaggcagctgatgttgccaaatctcagtttcttgca
actgtttcacacgagatcagaaccccaatgaatggtgtcctaggaatgtt
acacatgctaatggacacaaacctggatgttactcaactagattatgtcc
gaactgcccagggaagtggaaaagctctagtctcacttataaatgaggta
ttggaccaggcaaagattgaatctggtaagctggagcttgaggcagtgcg
ttttgatctgcgagctattctggatgatgttttgtcactcttttcgggga
agtctcaacaaaaaggagtagagttggcagtatacatctcagatcaggtt
cctgatatgcttattggtgatcccggacggtttaggcagattatcactaa
tctcatggggaattcaatcaaattcacagagaaaggacacatctttgtga
cggttcatcttgtcgaggagctgatcggctcaataggcgttgagaccgaa
tcatcatccaagaacactttgagtggtttccccgttgcagataaacaccg
cagttggggaggatttaggtgtttcggtcaagatggatctgcaagccgtt
tttcatcctcatctgacctcatcaatattattgtatctgttgaggacaca
ggagtaggaatccctctagaagcccaatctcgtgttttcactccttttat
gcaggtgggaccatccatctcacgtacacatggaggcacaggaattggac
taagcataagcaagtgtttggttggcctcatgaaaggggaaatcgggttt
gttagcattccgaagattggttccacatttacatttactgctgttttcac
caatgccagctccagttcaaatgagttaaccatcgagcaaatcaacagcc
agtcaaatgctgcatcctcagaatttaatggcatgacggcattagtagtg
gaccaaagacctgttagggccaagatgtcaagttatcatatcgaacggct
tggaattcgtgttgaagtagtttctgatttgaatcagggtttagctagca
taagctgtgggagtacaactatcaatatggtccttgttgaacaggaagtc
tggaataaagattctggaacttcagctctctttgtcagtaatttacggaa
aattgatggacaggttcctccaaaactgttcattcttgccaattctagta
gctcatgcagaataagctctgcaacttcaggtgtctctaccccaaccgtt
atcatgaaaccgctcagggcaagcatgctcgctgcctcactgcaaagagc
catgggagttggtaacaagggaaatctccggaatggggagctcccaagtt
tgtctctccgcaatcttctgctcggaaggaaaattcttattatagatgat
aataatgtgaatctcagagtagctgccggtgctttgaaaaagtatggggc
agaggtgatctgtgcagacagtggtaaaaaggcaatctcactgcttacgc
cgccccaccattttgatgcctgcttcatggatatccagatgccagagatg
gatgggtttgaagctacaaggagaatacgtgacttagaacgcaatatcag
caacagtattcaagcatggcatgtacccattctggccatgactgctgatg
taattcaggcaacccatgaggaatgcacaaagtgcggaatggatggatat
gtttcaaaaccattcgaagctgaacagctttatcgcgaagtttcacgttt
tttccaatctactacaactggaaacgcgtag

Coding sequence (CDS) from alignment at KM114880:1..3081+

>KM114880.1-CHK3A.m1 ID=KM114880.1-CHK3A.m1; Name=CHK3A; organism=Malus x domestica; type=CDS; length=3081bp; location=Sequence derived from: KM114880:1..3081+ (Malus x domestica
atgagtttattccatgtatttgggttcggtttaaaggtggggcatctgct
ttggatgctatgttgctggattgtatctgtaatttccatgaactggtacc
tcactggtgggattgtgacagacaccaaggtaggtttgcttggtgaagct
gccaatatgtgcctcaaatggtgggagaaaatcccaatgaacatcagcaa
gatccgccaccattactaccagtatatcgggtcgaagagagtccgaaaaa
cgtggtggaggaggcttttgttttcgtgggtggttgggtggacaattggg
agcctctggatcttgtggtacatgagctcacaggccagtgagaagaggaa
ggagactcttgcaagtatgtgtgatgaaagggcgaggatgttgcaggatc
agtttaatgtcagcatgaaccatatccaggccatgtcgatactgatctca
acattccaccacggaaagtatccatcggccattgatcagaaaacttttgc
gcggtacactgaaagaactgctttcgagagacccctcacaagtggcgtgg
catatgctgtaagggtgctccactcggaaaaggaacaatttgagaagcaa
cagggctggactatcaagagaatggataccctcgaacagaaccaggttca
taagaatgactatgccccagaggccttggaaccttccccagttcaggaag
aatatgctcctgttatctttgcacaggataccgttagacatgtcatctct
tttgatatgctgaccggaaaggaagatcgacaaaatgtgttgcgtgcaag
agaatcgggaaagggggttcttactgctccttttcggctgcttaaaacaa
acagacttggagtaatactgacatttgctgtctacaaaagagatctgccc
tcaaatgcaactccaaacgaaagaattcaggcgactgatgggtatctcgg
tggaatctttcatattgagtcactagtggagaagttacttcaacaactcg
ctagcaagcaaaccatccttgtggacgtgtatgatactaccaatcagtcg
catccaatcagcatgtacggttcaaatgtttcagatgatggattgcagca
cgtcagctccttaagttttggagatcccttaaggaaccatgagatgcggt
gcaggttcaaacagaagccaccttggccgtggttagccattacaacttct
attgggatccttgtgattgcattgcttgttggctacattttccatgcaac
tgtaaataggattgccaaagtggaggatgatttccataagatgatggaac
tcaagaaacaggccgaggcagctgatgttgccaaatctcagtttcttgca
actgtttcacacgagatcagaaccccaatgaatggtgtcctaggaatgtt
acacatgctaatggacacaaacctggatgttactcaactagattatgtcc
gaactgcccagggaagtggaaaagctctagtctcacttataaatgaggta
ttggaccaggcaaagattgaatctggtaagctggagcttgaggcagtgcg
ttttgatctgcgagctattctggatgatgttttgtcactcttttcgggga
agtctcaacaaaaaggagtagagttggcagtatacatctcagatcaggtt
cctgatatgcttattggtgatcccggacggtttaggcagattatcactaa
tctcatggggaattcaatcaaattcacagagaaaggacacatctttgtga
cggttcatcttgtcgaggagctgatcggctcaataggcgttgagaccgaa
tcatcatccaagaacactttgagtggtttccccgttgcagataaacaccg
cagttggggaggatttaggtgtttcggtcaagatggatctgcaagccgtt
tttcatcctcatctgacctcatcaatattattgtatctgttgaggacaca
ggagtaggaatccctctagaagcccaatctcgtgttttcactccttttat
gcaggtgggaccatccatctcacgtacacatggaggcacaggaattggac
taagcataagcaagtgtttggttggcctcatgaaaggggaaatcgggttt
gttagcattccgaagattggttccacatttacatttactgctgttttcac
caatgccagctccagttcaaatgagttaaccatcgagcaaatcaacagcc
agtcaaatgctgcatcctcagaatttaatggcatgacggcattagtagtg
gaccaaagacctgttagggccaagatgtcaagttatcatatcgaacggct
tggaattcgtgttgaagtagtttctgatttgaatcagggtttagctagca
taagctgtgggagtacaactatcaatatggtccttgttgaacaggaagtc
tggaataaagattctggaacttcagctctctttgtcagtaatttacggaa
aattgatggacaggttcctccaaaactgttcattcttgccaattctagta
gctcatgcagaataagctctgcaacttcaggtgtctctaccccaaccgtt
atcatgaaaccgctcagggcaagcatgctcgctgcctcactgcaaagagc
catgggagttggtaacaagggaaatctccggaatggggagctcccaagtt
tgtctctccgcaatcttctgctcggaaggaaaattcttattatagatgat
aataatgtgaatctcagagtagctgccggtgctttgaaaaagtatggggc
agaggtgatctgtgcagacagtggtaaaaaggcaatctcactgcttacgc
cgccccaccattttgatgcctgcttcatggatatccagatgccagagatg
gatgggtttgaagctacaaggagaatacgtgacttagaacgcaatatcag
caacagtattcaagcatggcatgtacccattctggccatgactgctgatg
taattcaggcaacccatgaggaatgcacaaagtgcggaatggatggatat
gtttcaaaaccattcgaagctgaacagctttatcgcgaagtttcacgttt
tttccaatctactacaactggaaacgcgtag