BHLH3b, KJ909758.1-BHLH3b.m1 (mRNA) Malus x domestica

Transcript Overview


Name	BHLH3b
Unique Name	KJ909758.1-BHLH3b.m1
Type	mRNA
Organism	Malus x domestica (Apple)
Source	genbank
Product	basic helix-loop-helix transcription factor

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KJ909758.1-BHLH3b.m1-cds1	KJ909758.1-BHLH3b.m1-cds1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
BHLH3b	KJ909758.1-BHLH3b.p1	Malus x domestica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	664680929
nuccore	KJ909758.1

Alignments

Feature Name	Type	Location	Analysis
KJ909758	region	KJ909758:1..2079+	NCBI Rosaceae gene and mRNA sequences
Chr03	chromosome	Chr03:35139785..35146616-	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr3	chromosome	chr3:36863022..36869420-	Malus x domestica Whole Genome v1.0p Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KJ909758:1..2079+
coding sequence from alignment at KJ909758:1..2079+

mRNA sequence

>KJ909758.1-BHLH3b.m1 ID=KJ909758.1-BHLH3b.m1; Name=BHLH3b; organism=Malus x domestica; type=mRNA; length=2079bp
atgttgcaggcctcagtccaatctgttcaatggacttacagtctcttctg
gcaaatctgtccccaacaagggatcttagtatggtcagatgggtactaca
atggagccatcaagacgaggaagacggtgcaaccaatggaagtgagtgcc
gaggaggcgtctctccagcggagccagcagctaagagagctctacgactc
tttgtctgctggagagacgaaccagccaccggcccgccgcccttgtgcct
ccttatccccggaggacttaaccgagtccgaatggttctacttgatgtgt
gtctcattctcctttccccccggcgtcgggttgccaggtaaagcatacgc
aaggaggcagcatgtatggctcaccggtgcaaacgaggtcgatagcaaaa
ccttttccagagctattttggcaaagagtgctcgtatacagactgtggtg
tgcattcctcttctagacggcgtcgtagagtttggcaccacagagagggt
tccagaagaccacgccttcgtccaacgcgtcaaaaccttcttcgttgncc
accaccaccctccgcccccaaaacccgccctctccgagcactccacctcc
aaccccaccacctcatccgaccacccacatttccactcctcaaacctcct
accagccatgtccacagaccctcctctcaacgccgcccaagaagacgatg
aggacgaagaagatgataatcaggaggaggacgacggagccgaatccgac
tccgaagctgaaacgggccccaatggtggagccattgttcccgctgcaaa
tcctcctcaggctttggccgcagttgccgagccaagcgagctcatgcaac
tcgagatgtccgaagacatccggctcggctcccctgacgacgcctcaaat
aacttggactctgatttcaacttgttagccttaagtcagtctaggaatcc
agccgatcagcagcgccaagctgactcgtatcgagccgagtcaacccggc
ggtggccgtcagtacaagagccactgagcagcggccttcaaccgccgcac
tcaggacccctagcgttagaggagttgacaaatgatgacacacattactc
ggagacggtctccaccatactccagggacaatcggctcggtggatgatga
attcgtccaccgattatgcagtttgttcgactcagtacactttcgcaaag
tggtcgagccgagttgatcaccacctccttatgccggtcgaaggcacatc
ccaatggctcttgaaatatatcttgttcagtgtaccgttcctccactcaa
aataccgtgacgagaactcgccgaaatctcacgagggtgaagcctcgact
cggttgaggaaagggaccccacaagacgagctcagcgccaatcatgtgtt
agcggaacgacgacgtagagagaagcttaatgagaggtttattatactaa
ggtcgcttgtgccttttgtgacaaaaatggacaaggcttccatattaggg
gacacaatcgagtacgtgaagcaactgcgtaagaaaattcaggatctcga
ggcacgtaacgtgccgatggaggatgatcaacagtcgagatcatccgggg
aaatgcaaaggtcgagtagttgtaaagagttgcgaagtgggctcccggta
gtagagcggacacaggccggtcacgggtcggataaaaggaagttgaggat
tgtggaaggaagcggtggcgtcgccattgctaagcctaaagcaatggagg
acttaccgcctccactgccgccaccaccacctcagccagaaccgtcaccg
acacctatggtgacgggaacttctttagaggtgtcaataatcgagagtga
cgggttgttggagctccaatgcccgtatagagaagggttattgcttgatg
tgatgcaaacacttagagagctaagaattgagaccatggttgtccattcc
tcattgaataacgggtacttcgtagctgaactaagggccaaggtgaagga
taacgtgaatggcaagaaaataagtattacggaagtgaagagggtgataa
atcaaattatacctcaatctgactcttaa

protein sequence of BHLH3b

>KJ909758.1-BHLH3b.p1 ID=KJ909758.1-BHLH3b.p1; Name=BHLH3b; organism=Malus x domestica; type=polypeptide; length=692bp
MLQASVQSVQWTYSLFWQICPQQGILVWSDGYYNGAIKTRKTVQPMEVSA
EEASLQRSQQLRELYDSLSAGETNQPPARRPCASLSPEDLTESEWFYLMC
VSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKSARIQTVV
CIPLLDGVVEFGTTERVPEDHAFVQRVKTFFVXHHHPPPPKPALSEHSTS
NPTTSSDHPHFHSSNLLPAMSTDPPLNAAQEDDEDEEDDNQEEDDGAESD
SEAETGPNGGAIVPAANPPQALAAVAEPSELMQLEMSEDIRLGSPDDASN
NLDSDFNLLALSQSRNPADQQRQADSYRAESTRRWPSVQEPLSSGLQPPH
SGPLALEELTNDDTHYSETVSTILQGQSARWMMNSSTDYAVCSTQYTFAK
WSSRVDHHLLMPVEGTSQWLLKYILFSVPFLHSKYRDENSPKSHEGEAST
RLRKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILG
DTIEYVKQLRKKIQDLEARNVPMEDDQQSRSSGEMQRSSSCKELRSGLPV
VERTQAGHGSDKRKLRIVEGSGGVAIAKPKAMEDLPPPLPPPPPQPEPSP
TPMVTGTSLEVSIIESDGLLELQCPYREGLLLDVMQTLRELRIETMVVHS
SLNNGYFVAELRAKVKDNVNGKKISITEVKRVINQIIPQSDS

mRNA from alignment at KJ909758:1..2079+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>KJ909758.1-BHLH3b.m1 ID=KJ909758.1-BHLH3b.m1; Name=BHLH3b; organism=Malus x domestica; type=mRNA; length=2079bp; location=Sequence derived from: KJ909758:1..2079+ (Malus x domestica
atgttgcaggcctcagtccaatctgttcaatggacttacagtctcttctg
gcaaatctgtccccaacaagggatcttagtatggtcagatgggtactaca
atggagccatcaagacgaggaagacggtgcaaccaatggaagtgagtgcc
gaggaggcgtctctccagcggagccagcagctaagagagctctacgactc
tttgtctgctggagagacgaaccagccaccggcccgccgcccttgtgcct
ccttatccccggaggacttaaccgagtccgaatggttctacttgatgtgt
gtctcattctcctttccccccggcgtcgggttgccaggtaaagcatacgc
aaggaggcagcatgtatggctcaccggtgcaaacgaggtcgatagcaaaa
ccttttccagagctattttggcaaagagtgctcgtatacagactgtggtg
tgcattcctcttctagacggcgtcgtagagtttggcaccacagagagggt
tccagaagaccacgccttcgtccaacgcgtcaaaaccttcttcgttgncc
accaccaccctccgcccccaaaacccgccctctccgagcactccacctcc
aaccccaccacctcatccgaccacccacatttccactcctcaaacctcct
accagccatgtccacagaccctcctctcaacgccgcccaagaagacgatg
aggacgaagaagatgataatcaggaggaggacgacggagccgaatccgac
tccgaagctgaaacgggccccaatggtggagccattgttcccgctgcaaa
tcctcctcaggctttggccgcagttgccgagccaagcgagctcatgcaac
tcgagatgtccgaagacatccggctcggctcccctgacgacgcctcaaat
aacttggactctgatttcaacttgttagccttaagtcagtctaggaatcc
agccgatcagcagcgccaagctgactcgtatcgagccgagtcaacccggc
ggtggccgtcagtacaagagccactgagcagcggccttcaaccgccgcac
tcaggacccctagcgttagaggagttgacaaatgatgacacacattactc
ggagacggtctccaccatactccagggacaatcggctcggtggatgatga
attcgtccaccgattatgcagtttgttcgactcagtacactttcgcaaag
tggtcgagccgagttgatcaccacctccttatgccggtcgaaggcacatc
ccaatggctcttgaaatatatcttgttcagtgtaccgttcctccactcaa
aataccgtgacgagaactcgccgaaatctcacgagggtgaagcctcgact
cggttgaggaaagggaccccacaagacgagctcagcgccaatcatgtgtt
agcggaacgacgacgtagagagaagcttaatgagaggtttattatactaa
ggtcgcttgtgccttttgtgacaaaaatggacaaggcttccatattaggg
gacacaatcgagtacgtgaagcaactgcgtaagaaaattcaggatctcga
ggcacgtaacgtgccgatggaggatgatcaacagtcgagatcatccgggg
aaatgcaaaggtcgagtagttgtaaagagttgcgaagtgggctcccggta
gtagagcggacacaggccggtcacgggtcggataaaaggaagttgaggat
tgtggaaggaagcggtggcgtcgccattgctaagcctaaagcaatggagg
acttaccgcctccactgccgccaccaccacctcagccagaaccgtcaccg
acacctatggtgacgggaacttctttagaggtgtcaataatcgagagtga
cgggttgttggagctccaatgcccgtatagagaagggttattgcttgatg
tgatgcaaacacttagagagctaagaattgagaccatggttgtccattcc
tcattgaataacgggtacttcgtagctgaactaagggccaaggtgaagga
taacgtgaatggcaagaaaataagtattacggaagtgaagagggtgataa
atcaaattatacctcaatctgactcttaa

Coding sequence (CDS) from alignment at KJ909758:1..2079+

>KJ909758.1-BHLH3b.m1 ID=KJ909758.1-BHLH3b.m1; Name=BHLH3b; organism=Malus x domestica; type=CDS; length=2079bp; location=Sequence derived from: KJ909758:1..2079+ (Malus x domestica
atgttgcaggcctcagtccaatctgttcaatggacttacagtctcttctg
gcaaatctgtccccaacaagggatcttagtatggtcagatgggtactaca
atggagccatcaagacgaggaagacggtgcaaccaatggaagtgagtgcc
gaggaggcgtctctccagcggagccagcagctaagagagctctacgactc
tttgtctgctggagagacgaaccagccaccggcccgccgcccttgtgcct
ccttatccccggaggacttaaccgagtccgaatggttctacttgatgtgt
gtctcattctcctttccccccggcgtcgggttgccaggtaaagcatacgc
aaggaggcagcatgtatggctcaccggtgcaaacgaggtcgatagcaaaa
ccttttccagagctattttggcaaagagtgctcgtatacagactgtggtg
tgcattcctcttctagacggcgtcgtagagtttggcaccacagagagggt
tccagaagaccacgccttcgtccaacgcgtcaaaaccttcttcgttgncc
accaccaccctccgcccccaaaacccgccctctccgagcactccacctcc
aaccccaccacctcatccgaccacccacatttccactcctcaaacctcct
accagccatgtccacagaccctcctctcaacgccgcccaagaagacgatg
aggacgaagaagatgataatcaggaggaggacgacggagccgaatccgac
tccgaagctgaaacgggccccaatggtggagccattgttcccgctgcaaa
tcctcctcaggctttggccgcagttgccgagccaagcgagctcatgcaac
tcgagatgtccgaagacatccggctcggctcccctgacgacgcctcaaat
aacttggactctgatttcaacttgttagccttaagtcagtctaggaatcc
agccgatcagcagcgccaagctgactcgtatcgagccgagtcaacccggc
ggtggccgtcagtacaagagccactgagcagcggccttcaaccgccgcac
tcaggacccctagcgttagaggagttgacaaatgatgacacacattactc
ggagacggtctccaccatactccagggacaatcggctcggtggatgatga
attcgtccaccgattatgcagtttgttcgactcagtacactttcgcaaag
tggtcgagccgagttgatcaccacctccttatgccggtcgaaggcacatc
ccaatggctcttgaaatatatcttgttcagtgtaccgttcctccactcaa
aataccgtgacgagaactcgccgaaatctcacgagggtgaagcctcgact
cggttgaggaaagggaccccacaagacgagctcagcgccaatcatgtgtt
agcggaacgacgacgtagagagaagcttaatgagaggtttattatactaa
ggtcgcttgtgccttttgtgacaaaaatggacaaggcttccatattaggg
gacacaatcgagtacgtgaagcaactgcgtaagaaaattcaggatctcga
ggcacgtaacgtgccgatggaggatgatcaacagtcgagatcatccgggg
aaatgcaaaggtcgagtagttgtaaagagttgcgaagtgggctcccggta
gtagagcggacacaggccggtcacgggtcggataaaaggaagttgaggat
tgtggaaggaagcggtggcgtcgccattgctaagcctaaagcaatggagg
acttaccgcctccactgccgccaccaccacctcagccagaaccgtcaccg
acacctatggtgacgggaacttctttagaggtgtcaataatcgagagtga
cgggttgttggagctccaatgcccgtatagagaagggttattgcttgatg
tgatgcaaacacttagagagctaagaattgagaccatggttgtccattcc
tcattgaataacgggtacttcgtagctgaactaagggccaaggtgaagga
taacgtgaatggcaagaaaataagtattacggaagtgaagagggtgataa
atcaaattatacctcaatctgactcttaa