S10-RNase, JQ280519.1-S10-RNase.m1 (mRNA) Prunus avium

Transcript Overview
NameS10-RNase
Unique NameJQ280519.1-S10-RNase.m1
TypemRNA
OrganismPrunus avium ()
Sourcegenbank
ProductS10-ribonuclease
Genbank NoteS10-RNase; coding region disrupted by sequencing gap
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2021-06-03
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
S10-RNaseJQ280519.1-S10-RNasePrunus aviumgene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
JQ280519.1-S10-RNase.m1-3utr1JQ280519.1-S10-RNase.m1-3utr1Prunus aviumthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
JQ280519.1-S10-RNase.m1-cds1JQ280519.1-S10-RNase.m1-cds1Prunus aviumCDS
JQ280519.1-S10-RNase.m1-cds2JQ280519.1-S10-RNase.m1-cds2Prunus aviumCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
S10-RNaseJQ280519.1-S10-RNase.p1Prunus aviumpolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI573155138
nuccoreJQ280519.1
Alignments
Feature NameTypeLocationAnalysis
JQ280519 region JQ280519:1..1160+ NCBI Rosaceae gene and mRNA sequences
Sequences
The following sequences are available for this feature:

mRNA sequence

>JQ280519.1-S10-RNase.m1 ID=JQ280519.1-S10-RNase.m1; Name=S10-RNase; organism=Prunus avium; type=mRNA; length=158bp
acttgttcttgctttcgctttcttcttgtgtttcattatgagcactggat
cttatgtttattttcaatttgtgcaacaatggccaccgaccaactgcaga
gttcgcaacaagcgaccttgctccaatccccggccattacaaaacttcac
cattcatg
back to top

protein sequence of S10-RNase

>JQ280519.1-S10-RNase.p1 ID=JQ280519.1-S10-RNase.p1; Name=S10-RNase; organism=Prunus avium; type=polypeptide; length=52bp
LVLAFAFFLCFIMSTGSYVYFQFVQQWPPTNCRVRNKRPCSNPRPLQNFT
IH
back to top

mRNA from alignment at JQ280519:1..1160+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>JQ280519.1-S10-RNase.m1 ID=JQ280519.1-S10-RNase.m1; Name=S10-RNase; organism=Prunus avium; type=mRNA; length=1160bp; location=Sequence derived from: JQ280519:1..1160+ (Prunus avium
acttgttcttgctttcgctttcttcttgtgtttcattatgagcactggtg
agttgcattacaatctttcgctctttataatatgcgtataatttgcattg
tatttttctacttctcttttatgtttggagaaatattatgtatgttcgat
tcgatgatatctagcgcataactttctttggccgagtaactacttgggca
ttacttttctgcatgctttctttcgtttactctgatagttattgcaataa
gtgctgcggaaattatgttctttatacatcaaattcttatttaagatacc
attaaccttctcacaatagttttcgcaggatcttatgtttattttcaatt
tgtgcaacaatggccaccgaccaactgcagagttcgcaacaagcgacctt
gctccaatccccggccattacaaaacttcaccattcatgnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctcagtatcac
ttgtataaaaccctatgtatatatatgagtataacaccctatatatatat
atatatatatgagtatgtttataataatgaatctggtcatacattacaaa
ttcaaaatattgtacgtaatgaaaggatcaaaatcaaagttgaatttaac
actcagatttaatgaaaaataatattatccaagaatgaaaatctaaccat
gccttataccctttacttgttctcaaaatatgtctatattgcttggatgt
ctcagtaccctgatttgcgatccgatctgaaaagatcttggcccgacgtg
gaaagtggcaatgatacgaaattttgggaaggcgaatggaacaaacatgg
tacatgttccgaacagacacttaaccaattccaatacttcgagcgatccc
acgacatgtggatgtcgaaaaatattacagaggtccttcaaaacgcttca
atcgtaccaagtgcaagacaaagatggaagtactcggacatagtagcacc
cattaaaacagcaactggaagaacacccctccttcgttgcaaacctgatc
caacacagaataagagcgggccgaagactcagttgttacatgaagtggta
ctttgttttg
back to top

Coding sequence (CDS) from alignment at JQ280519:1..1160+

>JQ280519.1-S10-RNase.m1 ID=JQ280519.1-S10-RNase.m1; Name=S10-RNase; organism=Prunus avium; type=CDS; length=158bp; location=Sequence derived from: JQ280519:1..1160+ (Prunus avium
acttgttcttgctttcgctttcttcttgtgtttcattatgagcactggat
cttatgtttattttcaatttgtgcaacaatggccaccgaccaactgcaga
gttcgcaacaagcgaccttgctccaatccccggccattacaaaacttcac
cattcatg
back to top