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Transcript Overview
| Name | PHOT1 |
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| Unique Name | AB743568.1-PHOT1.m1 |
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| Type | mRNA |
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| Organism | Fragaria x ananassa (Strawberry) |
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| Source | genbank |
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| Product | phototropin 1 |
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Analyses
This mRNA is derived from or has results from the following analyses
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| AB743568.1-PHOT1.m1-cds1 | AB743568.1-PHOT1.m1-cds1 | Fragaria x ananassa | CDS |
The following polypeptide feature(s) derives from this mRNA:
Cross References
External references for this mRNA
Alignments
| Feature Name | Type | Location | Analysis |
|---|
| AB743568 |
region |
AB743568:1..3087+ |
NCBI Rosaceae gene and mRNA sequences |
| LG3 |
chromosome |
LG3:27805777..27813320- |
Fragaria vesca Whole Genome v1.0 (build 8) Assembly & Annotation |
Sequences
The
following sequences are available for this feature:
mRNA sequence >AB743568.1-PHOT1.m1 ID=AB743568.1-PHOT1.m1; Name=PHOT1; organism=Fragaria x ananassa; type=mRNA; length=3087bp
atggaagacgaaccgtcggaaacaaccccagcctcactcattcctccact
cccaagagactcccgcggctccctcgaaatcttcaacccctcctcgaccc
gacccgccagcccgcctccctttcgccaatccaaacccgccacctggaaa
acctggctcgacccgcgtgacaccctaaaccccaaacccgacccgtcacc
accacccatccccgcctccaagtccggccgcgacgacggcaccatcacct
catggatggccctcaaggacttccctccaactccgccgccgccttccaag
ccgtcaaaacagtcccagcaggccccgccctatatccagcagcagcagac
catctccgccgcggtcaacgacaagtcaacgccggagcacggcgacgctg
cgcagagggccgccgagtgggggctggtgctgaagacggacaccgagacc
gggaagccgcagggagtgacgaccagaaactccggcggacccgaggaccc
gagtcacaaaccgggtacgtcgagaagaaactccaacaactctgtccgga
gctccggggagctctccgacgacggcggcggtggcggaggaatcggaaaa
gggttcccgagagtttcggaggacttgaaaaacgtgctgtcgacgtttca
gcagacgtttgtggtgtcggatgcaaccaaacccgattacccgatcatgt
acgccagcgccgggtttttcaagatgaccgggtacacctccaaggaggtc
atcggaagaaactgccggtttttgcagggagcggatacggacccggaaga
cgtggcgcagctgagagaggcgttggcgaagaacacgagctattgtgggc
ggttgttgaattataagaaagatgggacccctttttggaatttacttact
attgctcccatcaaggacgaaactggaaaggtcctcaaattcatcggaat
gcaagtggaggtgagtaagcacactgaggggtccaaggataagatgctgc
gccccaatggattgcctgaatctctcattcgatatgatgctcgtcagaaa
gagaaggctacacattcagtaactgagcttgtgcaggcagtgaggagacc
gaggtcacttagtgaatcgacaaatcgtccctttagaaagtcaggtggtg
gtggaaggggagaggaggtaatagaagctcacgcgaggccaagctcagag
agtttgcctcggagaaactcagagtccgtggcaccacctagacgtaactc
acttggtgatgctaacttctcaatgcatagtatcaaggaggttcctgaaa
agaaacagaaaaaacctagacgccgctctttcatggggattatgaagaaa
agtcaaactcaaaaccaactcgatgatgatacatttgatgagtttggagc
ttctgaggacgtccgtgacgacagtgacaatgatgagagacctatgagtc
ttgacgacaaagtgaggaagaaggaaatgaggaagggtatggatcttgct
acgacactggaacgtatagagaaaaactttgtcattactgatccaaggct
gcctgataatcccattatatttgcatccgacagcttcttagagctaacgg
agtacagccgcgaagaaatattgggaagaaattgcagattccttcaagga
ccagagactgatccagcaactgtgaagaaaataagagaggcaattgacaa
ccagactgaagtgaccgtacagctcatcaattacacgaaaagcggcaaaa
agttctggaatgtctttcatctgcagcctatgcgtgatcaaaagggagaa
gtacagtattttattggagtacaacttgatggaagtcagcacattgagcc
tctccagaactctattcctgaagttgcagcaaaagagagtgaaaaactgg
tcaaagagactgcagttaatgttgacgaggcagcaagagaacttccggat
gccaatatgaaaccagaagatttatggatgaatcattcgaaggttgttca
tccaaagcctcataggaaggatagccccccttggatagctattcaaaaga
ttctagacagtggagaacagataggattgaaacattttaagcctataaag
cccttgggatctggtgatactggcagtgtgcatttggtgcaactgtgtgg
aactgatcagtacttcgccatgaaggctatggataagaatatcatgctca
atcggaacaaggtgcatagagcttgtgcggagagagagatcctcgacatg
ttggatcacccttttcttcctgcattatatgcttcatttcagactaaaac
acatgtttgcctgatcactgattactaccctggtggagaactcttcctac
ttttggacactcaaccaacgaaggtcctgaaggaaaattcagtgagattt
tatgttgcagaggtagttgttgccttggagtaccttcactgtcaagggat
aatttacagggatttgaagcctgaaaatgttttacttcagagcaatgggc
acgtaaccctgaccgatttcgatttatcatgtttgacatcttgcaaacca
cagcttttacttccaaccattaacgaaaagaaaaggcatcacaaacgtca
acatgatccaatcttcatggctgaaccaatgagagcatcaaattcattcg
ttggcacggaagagtatatcgctccagaaatcataactggagctggccat
tctagtgcagtagactggtgggctcttggtattcttatatatgaaatgct
ctatggatatacaccgtttaggggaaagacaaggcaaaagacattcgcca
atattcttcacaaggatctcaaatttccaggaagtataccggcaagtctc
caagcaaagcagttgatgtatcggttgctgcatcgtgatcctaaaaacag
attggggtctctggaaggggcaaacgaaattaagcgtcaccctttctttc
ggggtgtcaactgggctctagttcgctgcatgaaccctcctcaacttgat
tcccctctcttcgggacaactgaagccgaaaagggagctaagcttgttga
tcctgagatgcaagatctacaaacaaatattttttaa back to topprotein sequence of PHOT1 >AB743568.1-PHOT1.p1 ID=AB743568.1-PHOT1.p1; Name=PHOT1; organism=Fragaria x ananassa; type=polypeptide; length=1028bp
MEDEPSETTPASLIPPLPRDSRGSLEIFNPSSTRPASPPPFRQSKPATWK
TWLDPRDTLNPKPDPSPPPIPASKSGRDDGTITSWMALKDFPPTPPPPSK
PSKQSQQAPPYIQQQQTISAAVNDKSTPEHGDAAQRAAEWGLVLKTDTET
GKPQGVTTRNSGGPEDPSHKPGTSRRNSNNSVRSSGELSDDGGGGGGIGK
GFPRVSEDLKNVLSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEV
IGRNCRFLQGADTDPEDVAQLREALAKNTSYCGRLLNYKKDGTPFWNLLT
IAPIKDETGKVLKFIGMQVEVSKHTEGSKDKMLRPNGLPESLIRYDARQK
EKATHSVTELVQAVRRPRSLSESTNRPFRKSGGGGRGEEVIEAHARPSSE
SLPRRNSESVAPPRRNSLGDANFSMHSIKEVPEKKQKKPRRRSFMGIMKK
SQTQNQLDDDTFDEFGASEDVRDDSDNDERPMSLDDKVRKKEMRKGMDLA
TTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQG
PETDPATVKKIREAIDNQTEVTVQLINYTKSGKKFWNVFHLQPMRDQKGE
VQYFIGVQLDGSQHIEPLQNSIPEVAAKESEKLVKETAVNVDEAARELPD
ANMKPEDLWMNHSKVVHPKPHRKDSPPWIAIQKILDSGEQIGLKHFKPIK
PLGSGDTGSVHLVQLCGTDQYFAMKAMDKNIMLNRNKVHRACAEREILDM
LDHPFLPALYASFQTKTHVCLITDYYPGGELFLLLDTQPTKVLKENSVRF
YVAEVVVALEYLHCQGIIYRDLKPENVLLQSNGHVTLTDFDLSCLTSCKP
QLLLPTINEKKRHHKRQHDPIFMAEPMRASNSFVGTEEYIAPEIITGAGH
SSAVDWWALGILIYEMLYGYTPFRGKTRQKTFANILHKDLKFPGSIPASL
QAKQLMYRLLHRDPKNRLGSLEGANEIKRHPFFRGVNWALVRCMNPPQLD
SPLFGTTEAEKGAKLVDPEMQDLQTNIF back to topmRNA from alignment at AB743568:1..3087+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >AB743568.1-PHOT1.m1 ID=AB743568.1-PHOT1.m1; Name=PHOT1; organism=Fragaria x ananassa; type=mRNA; length=3087bp; location=Sequence derived from: AB743568:1..3087+ (Fragaria x ananassa
atggaagacgaaccgtcggaaacaaccccagcctcactcattcctccact
cccaagagactcccgcggctccctcgaaatcttcaacccctcctcgaccc
gacccgccagcccgcctccctttcgccaatccaaacccgccacctggaaa
acctggctcgacccgcgtgacaccctaaaccccaaacccgacccgtcacc
accacccatccccgcctccaagtccggccgcgacgacggcaccatcacct
catggatggccctcaaggacttccctccaactccgccgccgccttccaag
ccgtcaaaacagtcccagcaggccccgccctatatccagcagcagcagac
catctccgccgcggtcaacgacaagtcaacgccggagcacggcgacgctg
cgcagagggccgccgagtgggggctggtgctgaagacggacaccgagacc
gggaagccgcagggagtgacgaccagaaactccggcggacccgaggaccc
gagtcacaaaccgggtacgtcgagaagaaactccaacaactctgtccgga
gctccggggagctctccgacgacggcggcggtggcggaggaatcggaaaa
gggttcccgagagtttcggaggacttgaaaaacgtgctgtcgacgtttca
gcagacgtttgtggtgtcggatgcaaccaaacccgattacccgatcatgt
acgccagcgccgggtttttcaagatgaccgggtacacctccaaggaggtc
atcggaagaaactgccggtttttgcagggagcggatacggacccggaaga
cgtggcgcagctgagagaggcgttggcgaagaacacgagctattgtgggc
ggttgttgaattataagaaagatgggacccctttttggaatttacttact
attgctcccatcaaggacgaaactggaaaggtcctcaaattcatcggaat
gcaagtggaggtgagtaagcacactgaggggtccaaggataagatgctgc
gccccaatggattgcctgaatctctcattcgatatgatgctcgtcagaaa
gagaaggctacacattcagtaactgagcttgtgcaggcagtgaggagacc
gaggtcacttagtgaatcgacaaatcgtccctttagaaagtcaggtggtg
gtggaaggggagaggaggtaatagaagctcacgcgaggccaagctcagag
agtttgcctcggagaaactcagagtccgtggcaccacctagacgtaactc
acttggtgatgctaacttctcaatgcatagtatcaaggaggttcctgaaa
agaaacagaaaaaacctagacgccgctctttcatggggattatgaagaaa
agtcaaactcaaaaccaactcgatgatgatacatttgatgagtttggagc
ttctgaggacgtccgtgacgacagtgacaatgatgagagacctatgagtc
ttgacgacaaagtgaggaagaaggaaatgaggaagggtatggatcttgct
acgacactggaacgtatagagaaaaactttgtcattactgatccaaggct
gcctgataatcccattatatttgcatccgacagcttcttagagctaacgg
agtacagccgcgaagaaatattgggaagaaattgcagattccttcaagga
ccagagactgatccagcaactgtgaagaaaataagagaggcaattgacaa
ccagactgaagtgaccgtacagctcatcaattacacgaaaagcggcaaaa
agttctggaatgtctttcatctgcagcctatgcgtgatcaaaagggagaa
gtacagtattttattggagtacaacttgatggaagtcagcacattgagcc
tctccagaactctattcctgaagttgcagcaaaagagagtgaaaaactgg
tcaaagagactgcagttaatgttgacgaggcagcaagagaacttccggat
gccaatatgaaaccagaagatttatggatgaatcattcgaaggttgttca
tccaaagcctcataggaaggatagccccccttggatagctattcaaaaga
ttctagacagtggagaacagataggattgaaacattttaagcctataaag
cccttgggatctggtgatactggcagtgtgcatttggtgcaactgtgtgg
aactgatcagtacttcgccatgaaggctatggataagaatatcatgctca
atcggaacaaggtgcatagagcttgtgcggagagagagatcctcgacatg
ttggatcacccttttcttcctgcattatatgcttcatttcagactaaaac
acatgtttgcctgatcactgattactaccctggtggagaactcttcctac
ttttggacactcaaccaacgaaggtcctgaaggaaaattcagtgagattt
tatgttgcagaggtagttgttgccttggagtaccttcactgtcaagggat
aatttacagggatttgaagcctgaaaatgttttacttcagagcaatgggc
acgtaaccctgaccgatttcgatttatcatgtttgacatcttgcaaacca
cagcttttacttccaaccattaacgaaaagaaaaggcatcacaaacgtca
acatgatccaatcttcatggctgaaccaatgagagcatcaaattcattcg
ttggcacggaagagtatatcgctccagaaatcataactggagctggccat
tctagtgcagtagactggtgggctcttggtattcttatatatgaaatgct
ctatggatatacaccgtttaggggaaagacaaggcaaaagacattcgcca
atattcttcacaaggatctcaaatttccaggaagtataccggcaagtctc
caagcaaagcagttgatgtatcggttgctgcatcgtgatcctaaaaacag
attggggtctctggaaggggcaaacgaaattaagcgtcaccctttctttc
ggggtgtcaactgggctctagttcgctgcatgaaccctcctcaacttgat
tcccctctcttcgggacaactgaagccgaaaagggagctaagcttgttga
tcctgagatgcaagatctacaaacaaatattttttaa back to topCoding sequence (CDS) from alignment at AB743568:1..3087+ >AB743568.1-PHOT1.m1 ID=AB743568.1-PHOT1.m1; Name=PHOT1; organism=Fragaria x ananassa; type=CDS; length=3087bp; location=Sequence derived from: AB743568:1..3087+ (Fragaria x ananassa
atggaagacgaaccgtcggaaacaaccccagcctcactcattcctccact
cccaagagactcccgcggctccctcgaaatcttcaacccctcctcgaccc
gacccgccagcccgcctccctttcgccaatccaaacccgccacctggaaa
acctggctcgacccgcgtgacaccctaaaccccaaacccgacccgtcacc
accacccatccccgcctccaagtccggccgcgacgacggcaccatcacct
catggatggccctcaaggacttccctccaactccgccgccgccttccaag
ccgtcaaaacagtcccagcaggccccgccctatatccagcagcagcagac
catctccgccgcggtcaacgacaagtcaacgccggagcacggcgacgctg
cgcagagggccgccgagtgggggctggtgctgaagacggacaccgagacc
gggaagccgcagggagtgacgaccagaaactccggcggacccgaggaccc
gagtcacaaaccgggtacgtcgagaagaaactccaacaactctgtccgga
gctccggggagctctccgacgacggcggcggtggcggaggaatcggaaaa
gggttcccgagagtttcggaggacttgaaaaacgtgctgtcgacgtttca
gcagacgtttgtggtgtcggatgcaaccaaacccgattacccgatcatgt
acgccagcgccgggtttttcaagatgaccgggtacacctccaaggaggtc
atcggaagaaactgccggtttttgcagggagcggatacggacccggaaga
cgtggcgcagctgagagaggcgttggcgaagaacacgagctattgtgggc
ggttgttgaattataagaaagatgggacccctttttggaatttacttact
attgctcccatcaaggacgaaactggaaaggtcctcaaattcatcggaat
gcaagtggaggtgagtaagcacactgaggggtccaaggataagatgctgc
gccccaatggattgcctgaatctctcattcgatatgatgctcgtcagaaa
gagaaggctacacattcagtaactgagcttgtgcaggcagtgaggagacc
gaggtcacttagtgaatcgacaaatcgtccctttagaaagtcaggtggtg
gtggaaggggagaggaggtaatagaagctcacgcgaggccaagctcagag
agtttgcctcggagaaactcagagtccgtggcaccacctagacgtaactc
acttggtgatgctaacttctcaatgcatagtatcaaggaggttcctgaaa
agaaacagaaaaaacctagacgccgctctttcatggggattatgaagaaa
agtcaaactcaaaaccaactcgatgatgatacatttgatgagtttggagc
ttctgaggacgtccgtgacgacagtgacaatgatgagagacctatgagtc
ttgacgacaaagtgaggaagaaggaaatgaggaagggtatggatcttgct
acgacactggaacgtatagagaaaaactttgtcattactgatccaaggct
gcctgataatcccattatatttgcatccgacagcttcttagagctaacgg
agtacagccgcgaagaaatattgggaagaaattgcagattccttcaagga
ccagagactgatccagcaactgtgaagaaaataagagaggcaattgacaa
ccagactgaagtgaccgtacagctcatcaattacacgaaaagcggcaaaa
agttctggaatgtctttcatctgcagcctatgcgtgatcaaaagggagaa
gtacagtattttattggagtacaacttgatggaagtcagcacattgagcc
tctccagaactctattcctgaagttgcagcaaaagagagtgaaaaactgg
tcaaagagactgcagttaatgttgacgaggcagcaagagaacttccggat
gccaatatgaaaccagaagatttatggatgaatcattcgaaggttgttca
tccaaagcctcataggaaggatagccccccttggatagctattcaaaaga
ttctagacagtggagaacagataggattgaaacattttaagcctataaag
cccttgggatctggtgatactggcagtgtgcatttggtgcaactgtgtgg
aactgatcagtacttcgccatgaaggctatggataagaatatcatgctca
atcggaacaaggtgcatagagcttgtgcggagagagagatcctcgacatg
ttggatcacccttttcttcctgcattatatgcttcatttcagactaaaac
acatgtttgcctgatcactgattactaccctggtggagaactcttcctac
ttttggacactcaaccaacgaaggtcctgaaggaaaattcagtgagattt
tatgttgcagaggtagttgttgccttggagtaccttcactgtcaagggat
aatttacagggatttgaagcctgaaaatgttttacttcagagcaatgggc
acgtaaccctgaccgatttcgatttatcatgtttgacatcttgcaaacca
cagcttttacttccaaccattaacgaaaagaaaaggcatcacaaacgtca
acatgatccaatcttcatggctgaaccaatgagagcatcaaattcattcg
ttggcacggaagagtatatcgctccagaaatcataactggagctggccat
tctagtgcagtagactggtgggctcttggtattcttatatatgaaatgct
ctatggatatacaccgtttaggggaaagacaaggcaaaagacattcgcca
atattcttcacaaggatctcaaatttccaggaagtataccggcaagtctc
caagcaaagcagttgatgtatcggttgctgcatcgtgatcctaaaaacag
attggggtctctggaaggggcaaacgaaattaagcgtcaccctttctttc
ggggtgtcaactgggctctagttcgctgcatgaaccctcctcaacttgat
tcccctctcttcgggacaactgaagccgaaaagggagctaagcttgttga
tcctgagatgcaagatctacaaacaaatattttttaa back to top
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