LOX9A, KC494372.1-LOX9A.m1 (mRNA) Malus x domestica

Transcript Overview


Name	LOX9A
Unique Name	KC494372.1-LOX9A.m1
Type	mRNA
Organism	Malus x domestica (Apple)
Source	genbank
Product	lipoxygenase

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
LOX9A	KC494372.1-LOX9A	Malus x domestica	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
KC494372.1-LOX9A.m1-cds1	KC494372.1-LOX9A.m1-cds1	Malus x domestica	CDS
KC494372.1-LOX9A.m1-cds2	KC494372.1-LOX9A.m1-cds2	Malus x domestica	CDS
KC494372.1-LOX9A.m1-cds3	KC494372.1-LOX9A.m1-cds3	Malus x domestica	CDS
KC494372.1-LOX9A.m1-cds4	KC494372.1-LOX9A.m1-cds4	Malus x domestica	CDS
KC494372.1-LOX9A.m1-cds5	KC494372.1-LOX9A.m1-cds5	Malus x domestica	CDS
KC494372.1-LOX9A.m1-cds6	KC494372.1-LOX9A.m1-cds6	Malus x domestica	CDS
KC494372.1-LOX9A.m1-cds7	KC494372.1-LOX9A.m1-cds7	Malus x domestica	CDS
KC494372.1-LOX9A.m1-cds8	KC494372.1-LOX9A.m1-cds8	Malus x domestica	CDS
KC494372.1-LOX9A.m1-cds9	KC494372.1-LOX9A.m1-cds9	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
LOX9A	KC494372.1-LOX9A.p1	Malus x domestica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	471329080
nuccore	KC494372.1

Alignments

Feature Name	Type	Location	Analysis
KC494372	region	KC494372:1..3337+	NCBI Rosaceae gene and mRNA sequences
Chr05	chromosome	Chr05:28646826..28650160+	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr6	chromosome	chr6:21406997..21410333+	Malus x domestica Whole Genome v1.0 Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KC494372:1..3337+
coding sequence from alignment at KC494372:1..3337+

mRNA sequence

>KC494372.1-LOX9A.m1 ID=KC494372.1-LOX9A.m1; Name=LOX9A; organism=Malus x domestica; type=mRNA; length=2529bp
atgcaacaccagcgccacccagttactagcccacagcggagcagacgctc
aactatcaaaggagaagttgtcgttgtccagagccataaacaatctggtt
cgggaaaatcagcttctcttcgattatatagttcgacagaagttgatcca
aaaactggcaaaggcaagttgagcaaccaagcttacctcaaatgtggaac
caccaaaacagatgatggtgaaaaaaccagaacatatagggtcaagttcc
aggttgaaccaaactttggaaatccaggagctttggttgtaagaaaccga
ggcaagaataggtttttcctccaatctgcatctcttcaaatccagaacaa
tcagattatacttttcgactgccactcctgggtgtatccattccgaacga
ccaaaaatttagatcgaattttctttgcaaatactaaatatcttccccat
caaacaccccaagctctaatagaactgaggaaggaagagcttattagctt
gagaggagatggaactggggagaggaaagaatgggaacgaatttacgatt
atgattactacaatgacctcggggatcctgacaaaggcgaagaacacaat
agacctgtcttgggtgggtcggaattacatccatatccgcgcagaggaag
aacaggccgccatcctagcaaggcagatcctttaactgaaagccgaccaa
gtaccattaacctggacatatacgttcctccggatgagaggttcagcccc
aagaaacaatctgagttcgcatcaaactcgatccaggctgtcctgcattt
cctgacccataaggtagaatctgtgatacagcccggttccaatcattttg
agtcatttgatgagatacatgacatgttttctcgcaacaaaagtcaagta
gttgagggcgctctcaaagagaaactgaaagctttagtaccaaaagagtt
tttcaaagaagttactcatgcaatcaagaaccccttgaaatttccagttc
ctcaaatcatagcagaaaacgaatttgcatggaagcatgatgaggagttc
ggccgccaaatgcttgcaggaatcaatccagcacgaatacgatccttgga
ggtatttccaccacgaagcaaaaacggacaagtgagtttaatagagcaat
cagacatagagcacaacctcgaaggaatgactcttcctcaggcaatgaac
aaaaggagaatgttcatcttggatcaccatgactatctcatgcccttctt
aagccaaatcaactcaaaggatgtttgtacttacgcatcctgtacactac
tattcttgaagagcgatttcacactaaagccaatagcaatagaacttagt
ttgccgggtttagaagtaaacaacgagatcaattgggtagttcaaccggc
aagtcagggcgaagctgcagcactgtggcagtatgctaaggcccatgttg
cagttaatgactctgtctatcatcaactagtcagccattggttgcataca
catgcggtggttgagccattcatcattgctactagaaggcagctcagtgt
gatgcacccagtccattggctactagatcctcatttcaaagacaccatgc
acgtaaacgctctggctcggagtatgctcattaactctggtggaatcctt
gagaagacattgttttctgctgaactctcgatgcagttatctgctgagct
ctacaaagagtggcgatttgatgaacaagcccttcctgctgatctactta
aaagaggtatggccatagaagacccagatccgaataacccttccggggtt
cagctccttttccaggactatccctatgctgcagatggacttgagatatg
gactgctatccagacttgggtaacagatttttgcatgctcttctacacag
acgacgtttctgtaagatctgatgaagaaatccaagcatggtggtctgaa
atccgaaacgttggtcacggtgataagagcagcgagacatggtggtacca
aatggcatcacgcgaggacctcatcaaagctttgacaactcttatatgga
ttgcatcagccttgcatgcttcagtaaactttgggcaatatgcatatgct
ggttatcctctaaatcgtcccacactgtgccgaaggttcattcctgagga
aggaacatttgaatatgcagagttcttgacggatccagacaaatactacc
ttaacatgttgactgaaaggggtgagatgatcttgggtatagcacttgca
gaggtgctctcacaacacacgtcggatgaagtgtacttgggtcagaggcc
atcaacaatgtggatacataatgaacaggttagcgataagtttgaaaagt
tcaaaagaaaacttcgaatgttagaggaaagaattgagtgcaagaacacc
gatcccaggcttaccaacagacgggggcatgccaagattccttacatgct
tctgtaccctgatacacccaatgttgaatccagagggggcatcacgggga
aggggattccaaacagtatatcaatttga

protein sequence of LOX9A

>KC494372.1-LOX9A.p1 ID=KC494372.1-LOX9A.p1; Name=LOX9A; organism=Malus x domestica; type=polypeptide; length=842bp
MQHQRHPVTSPQRSRRSTIKGEVVVVQSHKQSGSGKSASLRLYSSTEVDP
KTGKGKLSNQAYLKCGTTKTDDGEKTRTYRVKFQVEPNFGNPGALVVRNR
GKNRFFLQSASLQIQNNQIILFDCHSWVYPFRTTKNLDRIFFANTKYLPH
QTPQALIELRKEELISLRGDGTGERKEWERIYDYDYYNDLGDPDKGEEHN
RPVLGGSELHPYPRRGRTGRHPSKADPLTESRPSTINLDIYVPPDERFSP
KKQSEFASNSIQAVLHFLTHKVESVIQPGSNHFESFDEIHDMFSRNKSQV
VEGALKEKLKALVPKEFFKEVTHAIKNPLKFPVPQIIAENEFAWKHDEEF
GRQMLAGINPARIRSLEVFPPRSKNGQVSLIEQSDIEHNLEGMTLPQAMN
KRRMFILDHHDYLMPFLSQINSKDVCTYASCTLLFLKSDFTLKPIAIELS
LPGLEVNNEINWVVQPASQGEAAALWQYAKAHVAVNDSVYHQLVSHWLHT
HAVVEPFIIATRRQLSVMHPVHWLLDPHFKDTMHVNALARSMLINSGGIL
EKTLFSAELSMQLSAELYKEWRFDEQALPADLLKRGMAIEDPDPNNPSGV
QLLFQDYPYAADGLEIWTAIQTWVTDFCMLFYTDDVSVRSDEEIQAWWSE
IRNVGHGDKSSETWWYQMASREDLIKALTTLIWIASALHASVNFGQYAYA
GYPLNRPTLCRRFIPEEGTFEYAEFLTDPDKYYLNMLTERGEMILGIALA
EVLSQHTSDEVYLGQRPSTMWIHNEQVSDKFEKFKRKLRMLEERIECKNT
DPRLTNRRGHAKIPYMLLYPDTPNVESRGGITGKGIPNSISI

mRNA from alignment at KC494372:1..3337+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>KC494372.1-LOX9A.m1 ID=KC494372.1-LOX9A.m1; Name=LOX9A; organism=Malus x domestica; type=mRNA; length=3337bp; location=Sequence derived from: KC494372:1..3337+ (Malus x domestica
atgcaacaccagcgccacccagttactagcccacagcggagcagacgctc
aactatcaaaggagaagttgtcgttgtccagagccataaacaatctggtt
cgggaaaatcagcttctcttcgattatatagttcgacagaagttgatcca
agtgagttcaaactggagcaattactttgaaaaactaatgagctttgtgt
aattctctgacccgaaaatcttcgctttcttgatgttgtatccaacagaa
actggcaaaggcaagttgagcaaccaagcttacctcaaatgtggaaccac
caaaacagatgatggtgaaaaaaccagaacatatagggtcaagttccagg
ttgaaccaaactttggaaatccaggagctttggttgtaagaaaccgaggc
aagaataggtttttcctccaatctgcatctcttcaaatccagaacaatca
gattatacttttcgactgccactcctgggtgtatccattccgaacgacca
aaaatttagatcgaattttctttgcaaatactgtaagttgcacaaatact
aacttgcctgttttatttgacacaagtatttgcaaatgcaattaagcaac
acagctgctcatgttgttacagaaatatcttccccatcaaacaccccaag
ctctaatagaactgaggaaggaagagcttattagcttgagaggagatgga
actggggagaggaaagaatgggaacgaatttacgattatgattactacaa
tgacctcggggatcctgacaaaggcgaagaacacaatagacctgtcttgg
gtgggtcggaattacatccatatccgcgcagaggaagaacaggccgccat
cctagcaaggcaggtatacaacttctctttcttctcatttcaattttgtt
gtcagagcaaatagtatttccatggctaacatgacaaatcgtagatcctt
taactgaaagccgaccaagtaccattaacctggacatatacgttcctccg
gatgagaggttcagccccaagaaacaatctgagttcgcatcaaactcgat
ccaggctgtcctgcatttcctgacccataaggtagaatctgtgatacagc
ccggttccaatcattttgagtcatttgatgagatacatgacatgttttct
cgcaacaaaagtcaagtagttgagggcgctctcaaagagaaactgaaagc
tttagtaccaaaagagtttttcaaagaagttactcatgcaatcaagaacc
ccttgaaatttccagttcctcaaatcatagcaggtgacggagctgactat
tacactactgcagcttgcacggtagatgccacttcataactctttagatt
gttgttttccactttccagaaaacgaatttgcatggaagcatgatgagga
gttcggccgccaaatgcttgcaggaatcaatccagcacgaatacgatcct
tggaggtacatcctacccttactcaacctgtactgtttctacgcgattaa
caacaaaacaattctagttatcttcatatatcggttttcttttgagaaaa
ttgaaggtatttccaccacgaagcaaaaacggacaagtgagtttaataga
gcaatcagacatagagcacaacctcgaaggaatgactcttcctcaggtaa
ttctgtatgatcatcctgcctcccaaactgaaaaatcagtatataattca
caccggttgtaaattcaacccaacgttgtatcacagaaggaatgcatttt
catagcaattgttttttttataaatttccataaacttcacaggcaatgaa
caaaaggagaatgttcatcttggatcaccatgactatctcatgcccttct
taagccaaatcaactcaaaggatgtttgtacttacgcatcctgtacacta
ctattcttgaagagcgatttcacactaaagccaatagcaatagaacttag
tttgccgggtttagaagtaaacaacgagatcaattgggtagttcaaccgg
caagtcagggcgaagctgcagcactgtggcagtatgctaaggcccatgtt
gcagttaatgactctgtctatcatcaactagtcagccattggtgagttga
actgtttgatgaaccctaaatactgcatttatcattgttcattgcatttc
atacaaccaaaatgcttgcccgtgcaatgaatcttttaggttgcatacac
atgcggtggttgagccattcatcattgctactagaaggcagctcagtgtg
atgcacccagtccattggctactagatcctcatttcaaagacaccatgca
cgtaaacgctctggctcggagtatgctcattaactctggtggaatccttg
agaagacattgttttctgctgaactctcgatgcagttatctgctgagctc
tacaaagagtggcgatttgatgaacaagcccttcctgctgatctacttaa
aaggtatttataattccatgataaccctgggtcataattcgacattcagt
gagcaatattgtttatctgaagatgctttccaagaagtgatttctttgtg
aacacttttcagaggtatggccatagaagacccagatccgaataaccctt
ccggggttcagctccttttccaggactatccctatgctgcagatggactt
gagatatggactgctatccagacttgggtaacagatttttgcatgctctt
ctacacagacgacgtttctgtaagatctgatgaagaaatccaagcatggt
ggtctgaaatccgaaacgttggtcacggtgataagagcagcgagacatgg
tggtaccaaatggcatcacgcgaggacctcatcaaagctttgacaactct
tatatggattgcatcagccttgcatgcttcagtaaactttgggcaatatg
catatgctggttatcctctaaatcgtcccacactgtgccgaaggttcatt
cctgaggaaggaacatttgaatatgcagagttcttgacggatccagacaa
atactaccttaacatgttgactgaaaggggtgagatgatcttgggtatag
cacttgcagaggtgctctcacaacacacgtcggatgaagtgtacttgggt
cagaggccatcaacaatgtggatacataatgaacaggttagcgataagtt
tgaaaagttcaaaagaaaacttcgaatgttagaggaaagaattgagtgca
agaacaccgatcccaggcttaccaacagacgggggcatgccaagattcct
tacatgcttctgtaccctgatacacccaatgttgaatccagagggggcat
cacggggaaggggattccaaacagtatatcaatttga

Coding sequence (CDS) from alignment at KC494372:1..3337+

>KC494372.1-LOX9A.m1 ID=KC494372.1-LOX9A.m1; Name=LOX9A; organism=Malus x domestica; type=CDS; length=2529bp; location=Sequence derived from: KC494372:1..3337+ (Malus x domestica
atgcaacaccagcgccacccagttactagcccacagcggagcagacgctc
aactatcaaaggagaagttgtcgttgtccagagccataaacaatctggtt
cgggaaaatcagcttctcttcgattatatagttcgacagaagttgatcca
aaaactggcaaaggcaagttgagcaaccaagcttacctcaaatgtggaac
caccaaaacagatgatggtgaaaaaaccagaacatatagggtcaagttcc
aggttgaaccaaactttggaaatccaggagctttggttgtaagaaaccga
ggcaagaataggtttttcctccaatctgcatctcttcaaatccagaacaa
tcagattatacttttcgactgccactcctgggtgtatccattccgaacga
ccaaaaatttagatcgaattttctttgcaaatactaaatatcttccccat
caaacaccccaagctctaatagaactgaggaaggaagagcttattagctt
gagaggagatggaactggggagaggaaagaatgggaacgaatttacgatt
atgattactacaatgacctcggggatcctgacaaaggcgaagaacacaat
agacctgtcttgggtgggtcggaattacatccatatccgcgcagaggaag
aacaggccgccatcctagcaaggcagatcctttaactgaaagccgaccaa
gtaccattaacctggacatatacgttcctccggatgagaggttcagcccc
aagaaacaatctgagttcgcatcaaactcgatccaggctgtcctgcattt
cctgacccataaggtagaatctgtgatacagcccggttccaatcattttg
agtcatttgatgagatacatgacatgttttctcgcaacaaaagtcaagta
gttgagggcgctctcaaagagaaactgaaagctttagtaccaaaagagtt
tttcaaagaagttactcatgcaatcaagaaccccttgaaatttccagttc
ctcaaatcatagcagaaaacgaatttgcatggaagcatgatgaggagttc
ggccgccaaatgcttgcaggaatcaatccagcacgaatacgatccttgga
ggtatttccaccacgaagcaaaaacggacaagtgagtttaatagagcaat
cagacatagagcacaacctcgaaggaatgactcttcctcaggcaatgaac
aaaaggagaatgttcatcttggatcaccatgactatctcatgcccttctt
aagccaaatcaactcaaaggatgtttgtacttacgcatcctgtacactac
tattcttgaagagcgatttcacactaaagccaatagcaatagaacttagt
ttgccgggtttagaagtaaacaacgagatcaattgggtagttcaaccggc
aagtcagggcgaagctgcagcactgtggcagtatgctaaggcccatgttg
cagttaatgactctgtctatcatcaactagtcagccattggttgcataca
catgcggtggttgagccattcatcattgctactagaaggcagctcagtgt
gatgcacccagtccattggctactagatcctcatttcaaagacaccatgc
acgtaaacgctctggctcggagtatgctcattaactctggtggaatcctt
gagaagacattgttttctgctgaactctcgatgcagttatctgctgagct
ctacaaagagtggcgatttgatgaacaagcccttcctgctgatctactta
aaagaggtatggccatagaagacccagatccgaataacccttccggggtt
cagctccttttccaggactatccctatgctgcagatggacttgagatatg
gactgctatccagacttgggtaacagatttttgcatgctcttctacacag
acgacgtttctgtaagatctgatgaagaaatccaagcatggtggtctgaa
atccgaaacgttggtcacggtgataagagcagcgagacatggtggtacca
aatggcatcacgcgaggacctcatcaaagctttgacaactcttatatgga
ttgcatcagccttgcatgcttcagtaaactttgggcaatatgcatatgct
ggttatcctctaaatcgtcccacactgtgccgaaggttcattcctgagga
aggaacatttgaatatgcagagttcttgacggatccagacaaatactacc
ttaacatgttgactgaaaggggtgagatgatcttgggtatagcacttgca
gaggtgctctcacaacacacgtcggatgaagtgtacttgggtcagaggcc
atcaacaatgtggatacataatgaacaggttagcgataagtttgaaaagt
tcaaaagaaaacttcgaatgttagaggaaagaattgagtgcaagaacacc
gatcccaggcttaccaacagacgggggcatgccaagattccttacatgct
tctgtaccctgatacacccaatgttgaatccagagggggcatcacgggga
aggggattccaaacagtatatcaatttga