|
|
Transcript Overview
| Name | GAL1 |
|---|
| Unique Name | KC107807.1-GAL1.m1 |
|---|
| Type | mRNA |
|---|
| Organism | Malus x domestica (Apple) |
|---|
| Source | genbank |
|---|
| Product | beta-galactosidase 101 |
|---|
| Genbank Note | similar to BGAL1 in INSD accession L29451 |
|---|
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KC107807.1-GAL1.m1-cds1 | KC107807.1-GAL1.m1-cds1 | Malus x domestica | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| GAL1 | KC107807.1-GAL1.p1 | Malus x domestica | polypeptide |
Cross References
External references for this mRNA
Alignments
| Feature Name | Type | Location | Analysis |
|---|
| KC107807 |
region |
KC107807:30..2207+ |
NCBI Rosaceae gene and mRNA sequences |
| Chr02 |
chromosome |
Chr02:6233598..6238460+ |
Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation |
| chr2 |
chromosome |
chr2:6055951..6060808+ |
Malus x domestica Whole Genome v1.0 Assembly & Annotation |
| chr2 |
chromosome |
chr2:6055951..6060808+ |
Malus x domestica Whole Genome v1.0p Assembly & Annotation |
Sequences
The
following sequences are available for this feature:
mRNA sequence >KC107807.1-GAL1.m1 ID=KC107807.1-GAL1.m1; Name=GAL1; organism=Malus x domestica; type=mRNA; length=2178bp
atgggtgttggaattcaaacaatgtggagcattctgctactgctttcctg
cattttttctgcagcttcagcttccgtgggttatgaccacaaagctataa
taattaatgggcagagaaggattttaatttctggatcaattcactatccc
agaagcactcctgagatgtggccggatttgattcagaaggccaaagctgg
aggcttggatgttatacagacctatgtgttttggaatggccatgaacctt
ctccaggaaaatattattttgaggacagatatgatttggtcaagttcatc
aagctggtgcaacaggcaggcctctttgttaatctccggattgggccata
tgtctgtgctgaatggaacttcgggggattcccaatttggctgaaatatg
ttcccggaatcgcttttcgaacagacaacgagcctttcaaggcggcaatg
caaaaatttacagagaagattgtcaacatgatgaaggcagagaagctgtt
ccaaactgaaggaggtcctataattctttctcagatagaaaatgaatatg
gacctgtggaatgggaaattggtgcaccaggaaaagcttacaccaaatgg
gcagctcagatggctgtaggtctcaacactggagtcccatggattatgtg
caagcaagaggatgcccccgatcccgttattgacacctgcaatggttact
actgtgagaatttcaagccaaacaaggtctacaagccaaaaatgtggaca
gaagtctggactggttggtatacagaattcggtggggcaattcccactag
acctgtcgaagatttggcattttcagttgctaggttcatacaaagtggcg
gttcttttttcaactattacatgtatcacggaggaacgaattttggcaga
actgctggaggtcccttcatggccaccagctatgactatgacgccccctt
ggacgaatatggactactccagcaaccaaagtggggacatttgaaagatc
tgcacaaagccatcaagtcatgcgagtatgctttggtggccgttgatcct
tcagtgactaaactcggaaataatcaagaggctcatgtattcaatacaaa
gtcggggtgcgctgcattcctcgcaaactatgacacgaaataccctgtta
gagtgagctttggacaggggcagtatgacctgccaccatggtccatcagc
attctcccggactgcaaaactgcagttttcaacactgcaaaggtcacttg
gaaaacctcgcaagtgcagatgaaaccagtatatagtagacttccttggc
agtcattcatcgaagaaaccaccacttctgatgagtccggtacaactacc
ttagatgggttgtatgaacagatatatatgactagggatgctactgacta
cttgtggtacatgacagacatcacaataggttctgatgaagcgtttctaa
acaacggaaagttcccacttcttactatcttttcagcatgtcatgcctta
catgttttcatcaatggtcagctatcaggaaccgtgtatgggtcattgga
gaatcctaaactaacattcagtcagaacgtgaagttgagacccggcatca
acaagcttgcattgcttagcatttctgttggtctgccgaatgttggcact
cactttgaaacatggaacgcgggagttctaggcccgatctcattgaaggg
tttgaatacgggaacatgggacatgtcacgatggaaatggacctacaaga
ttggtatgaaaggtgaagctttaggcctgcatacagttactgggagttct
tctgttgactgggcagaaggaccgtcgatggctaaaaaacaaccccttac
gtggtacaaggcaactttcaatgcaccaccaggtcatgccccattagctt
tagatatgggaagcatgggaaaaggtcaaatatggataaatggacagagc
gttggacgccattggcctggatacattgcgcagggtagctgtggaacatg
taattatgccggaactttttatgataagaaatgcagaacttattgcggca
agccttctcagagatggtaccatattcctcgatcgtggttgaccccgact
ggaaatctactggtggtgttcgaagaatggggtggtgatccgcaatggat
gtctttagtcgaaagagtaagagtctga back to topprotein sequence of GAL1 >KC107807.1-GAL1.p1 ID=KC107807.1-GAL1.p1; Name=GAL1; organism=Malus x domestica; type=polypeptide; length=725bp
MGVGIQTMWSILLLLSCIFSAASASVGYDHKAIIINGQRRILISGSIHYP
RSTPEMWPDLIQKAKAGGLDVIQTYVFWNGHEPSPGKYYFEDRYDLVKFI
KLVQQAGLFVNLRIGPYVCAEWNFGGFPIWLKYVPGIAFRTDNEPFKAAM
QKFTEKIVNMMKAEKLFQTEGGPIILSQIENEYGPVEWEIGAPGKAYTKW
AAQMAVGLNTGVPWIMCKQEDAPDPVIDTCNGYYCENFKPNKVYKPKMWT
EVWTGWYTEFGGAIPTRPVEDLAFSVARFIQSGGSFFNYYMYHGGTNFGR
TAGGPFMATSYDYDAPLDEYGLLQQPKWGHLKDLHKAIKSCEYALVAVDP
SVTKLGNNQEAHVFNTKSGCAAFLANYDTKYPVRVSFGQGQYDLPPWSIS
ILPDCKTAVFNTAKVTWKTSQVQMKPVYSRLPWQSFIEETTTSDESGTTT
LDGLYEQIYMTRDATDYLWYMTDITIGSDEAFLNNGKFPLLTIFSACHAL
HVFINGQLSGTVYGSLENPKLTFSQNVKLRPGINKLALLSISVGLPNVGT
HFETWNAGVLGPISLKGLNTGTWDMSRWKWTYKIGMKGEALGLHTVTGSS
SVDWAEGPSMAKKQPLTWYKATFNAPPGHAPLALDMGSMGKGQIWINGQS
VGRHWPGYIAQGSCGTCNYAGTFYDKKCRTYCGKPSQRWYHIPRSWLTPT
GNLLVVFEEWGGDPQWMSLVERVRV back to topmRNA from alignment at KC107807:30..2207+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >KC107807.1-GAL1.m1 ID=KC107807.1-GAL1.m1; Name=GAL1; organism=Malus x domestica; type=mRNA; length=2178bp; location=Sequence derived from: KC107807:30..2207+ (Malus x domestica
atgggtgttggaattcaaacaatgtggagcattctgctactgctttcctg
cattttttctgcagcttcagcttccgtgggttatgaccacaaagctataa
taattaatgggcagagaaggattttaatttctggatcaattcactatccc
agaagcactcctgagatgtggccggatttgattcagaaggccaaagctgg
aggcttggatgttatacagacctatgtgttttggaatggccatgaacctt
ctccaggaaaatattattttgaggacagatatgatttggtcaagttcatc
aagctggtgcaacaggcaggcctctttgttaatctccggattgggccata
tgtctgtgctgaatggaacttcgggggattcccaatttggctgaaatatg
ttcccggaatcgcttttcgaacagacaacgagcctttcaaggcggcaatg
caaaaatttacagagaagattgtcaacatgatgaaggcagagaagctgtt
ccaaactgaaggaggtcctataattctttctcagatagaaaatgaatatg
gacctgtggaatgggaaattggtgcaccaggaaaagcttacaccaaatgg
gcagctcagatggctgtaggtctcaacactggagtcccatggattatgtg
caagcaagaggatgcccccgatcccgttattgacacctgcaatggttact
actgtgagaatttcaagccaaacaaggtctacaagccaaaaatgtggaca
gaagtctggactggttggtatacagaattcggtggggcaattcccactag
acctgtcgaagatttggcattttcagttgctaggttcatacaaagtggcg
gttcttttttcaactattacatgtatcacggaggaacgaattttggcaga
actgctggaggtcccttcatggccaccagctatgactatgacgccccctt
ggacgaatatggactactccagcaaccaaagtggggacatttgaaagatc
tgcacaaagccatcaagtcatgcgagtatgctttggtggccgttgatcct
tcagtgactaaactcggaaataatcaagaggctcatgtattcaatacaaa
gtcggggtgcgctgcattcctcgcaaactatgacacgaaataccctgtta
gagtgagctttggacaggggcagtatgacctgccaccatggtccatcagc
attctcccggactgcaaaactgcagttttcaacactgcaaaggtcacttg
gaaaacctcgcaagtgcagatgaaaccagtatatagtagacttccttggc
agtcattcatcgaagaaaccaccacttctgatgagtccggtacaactacc
ttagatgggttgtatgaacagatatatatgactagggatgctactgacta
cttgtggtacatgacagacatcacaataggttctgatgaagcgtttctaa
acaacggaaagttcccacttcttactatcttttcagcatgtcatgcctta
catgttttcatcaatggtcagctatcaggaaccgtgtatgggtcattgga
gaatcctaaactaacattcagtcagaacgtgaagttgagacccggcatca
acaagcttgcattgcttagcatttctgttggtctgccgaatgttggcact
cactttgaaacatggaacgcgggagttctaggcccgatctcattgaaggg
tttgaatacgggaacatgggacatgtcacgatggaaatggacctacaaga
ttggtatgaaaggtgaagctttaggcctgcatacagttactgggagttct
tctgttgactgggcagaaggaccgtcgatggctaaaaaacaaccccttac
gtggtacaaggcaactttcaatgcaccaccaggtcatgccccattagctt
tagatatgggaagcatgggaaaaggtcaaatatggataaatggacagagc
gttggacgccattggcctggatacattgcgcagggtagctgtggaacatg
taattatgccggaactttttatgataagaaatgcagaacttattgcggca
agccttctcagagatggtaccatattcctcgatcgtggttgaccccgact
ggaaatctactggtggtgttcgaagaatggggtggtgatccgcaatggat
gtctttagtcgaaagagtaagagtctga back to topCoding sequence (CDS) from alignment at KC107807:30..2207+ >KC107807.1-GAL1.m1 ID=KC107807.1-GAL1.m1; Name=GAL1; organism=Malus x domestica; type=CDS; length=2178bp; location=Sequence derived from: KC107807:30..2207+ (Malus x domestica
atgggtgttggaattcaaacaatgtggagcattctgctactgctttcctg
cattttttctgcagcttcagcttccgtgggttatgaccacaaagctataa
taattaatgggcagagaaggattttaatttctggatcaattcactatccc
agaagcactcctgagatgtggccggatttgattcagaaggccaaagctgg
aggcttggatgttatacagacctatgtgttttggaatggccatgaacctt
ctccaggaaaatattattttgaggacagatatgatttggtcaagttcatc
aagctggtgcaacaggcaggcctctttgttaatctccggattgggccata
tgtctgtgctgaatggaacttcgggggattcccaatttggctgaaatatg
ttcccggaatcgcttttcgaacagacaacgagcctttcaaggcggcaatg
caaaaatttacagagaagattgtcaacatgatgaaggcagagaagctgtt
ccaaactgaaggaggtcctataattctttctcagatagaaaatgaatatg
gacctgtggaatgggaaattggtgcaccaggaaaagcttacaccaaatgg
gcagctcagatggctgtaggtctcaacactggagtcccatggattatgtg
caagcaagaggatgcccccgatcccgttattgacacctgcaatggttact
actgtgagaatttcaagccaaacaaggtctacaagccaaaaatgtggaca
gaagtctggactggttggtatacagaattcggtggggcaattcccactag
acctgtcgaagatttggcattttcagttgctaggttcatacaaagtggcg
gttcttttttcaactattacatgtatcacggaggaacgaattttggcaga
actgctggaggtcccttcatggccaccagctatgactatgacgccccctt
ggacgaatatggactactccagcaaccaaagtggggacatttgaaagatc
tgcacaaagccatcaagtcatgcgagtatgctttggtggccgttgatcct
tcagtgactaaactcggaaataatcaagaggctcatgtattcaatacaaa
gtcggggtgcgctgcattcctcgcaaactatgacacgaaataccctgtta
gagtgagctttggacaggggcagtatgacctgccaccatggtccatcagc
attctcccggactgcaaaactgcagttttcaacactgcaaaggtcacttg
gaaaacctcgcaagtgcagatgaaaccagtatatagtagacttccttggc
agtcattcatcgaagaaaccaccacttctgatgagtccggtacaactacc
ttagatgggttgtatgaacagatatatatgactagggatgctactgacta
cttgtggtacatgacagacatcacaataggttctgatgaagcgtttctaa
acaacggaaagttcccacttcttactatcttttcagcatgtcatgcctta
catgttttcatcaatggtcagctatcaggaaccgtgtatgggtcattgga
gaatcctaaactaacattcagtcagaacgtgaagttgagacccggcatca
acaagcttgcattgcttagcatttctgttggtctgccgaatgttggcact
cactttgaaacatggaacgcgggagttctaggcccgatctcattgaaggg
tttgaatacgggaacatgggacatgtcacgatggaaatggacctacaaga
ttggtatgaaaggtgaagctttaggcctgcatacagttactgggagttct
tctgttgactgggcagaaggaccgtcgatggctaaaaaacaaccccttac
gtggtacaaggcaactttcaatgcaccaccaggtcatgccccattagctt
tagatatgggaagcatgggaaaaggtcaaatatggataaatggacagagc
gttggacgccattggcctggatacattgcgcagggtagctgtggaacatg
taattatgccggaactttttatgataagaaatgcagaacttattgcggca
agccttctcagagatggtaccatattcctcgatcgtggttgaccccgact
ggaaatctactggtggtgttcgaagaatggggtggtgatccgcaatggat
gtctttagtcgaaagagtaagagtctga back to top
|
