RPOB, JX118043.1-RPOB.m2 (mRNA) Fragaria virginiana

Transcript Overview


Name	RPOB
Unique Name	JX118043.1-RPOB.m2
Type	mRNA
Organism	Fragaria virginiana ()
Source	genbank
Product	RNA polymerase beta subunit

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
JX118043	region	JX118043:1666..4090 -	NCBI Rosaceae gene and mRNA sequences	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
RPOB	JX118043.1-RPOB	Fragaria virginiana	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
JX118043.1-RPOB.m2-cds1	JX118043.1-RPOB.m2-cds1	Fragaria virginiana	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
RPOB	JX118043.1-RPOB.p2	Fragaria virginiana	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	406822452
nuccore	JX118043.1

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at JX118043:1666..4090-
coding sequence from alignment at JX118043:1666..4090-

mRNA sequence

>JX118043.1-RPOB.m2 ID=JX118043.1-RPOB.m2; Name=RPOB; organism=Fragaria virginiana; type=mRNA; length=2425bp
acgaaatatgaaccgaaggctgaatcttgatatccctcagaacaacacat
ttttgttaccgcgagatatattggcagctgcggatcatttgattggaatg
aaatttggaatgggtacacttgacgatatgaatcatttgaaaaataaacg
tattcggtctgtcgcagatcttttacaagaccaatttggattgtccctgg
ttcgtttagaaaatatggttagagggactatatgcggagcaattaagcat
aaattgatacccactcctcagaatttggtaacttcaactccattaacaac
cacttatgaatctttttttggattacacccattatctcaagttttggatc
gaactaatccattgacccaaatagttcatgggagaaaatcgagttatctg
ggccctggaggattgacagggcgaactgctagttttcggatacgagatat
tcaccccagtcactacggacgcatttgccctattgacacgtctgaaggaa
tcaatgttggacttattggatccttagcaattcatgcgaagattggttat
tgggggtctctagaaagtccgttttatgaaatttctgagagatcaaaaaa
agtacggatgctctatttatcaccaagtaaagatgaatactatatgatag
cggcaggaaattctttgggcttgaatcgaggtattcaggaagaacaggtt
gttccagctcgataccgtcaagaattcctgactgttgaatgggaacaggt
tcatcttcgaagtatttttcccttccaatatttttctattggagcttccc
tgattccttttattgagcataatgatgcgaatcgagctttaatgagttct
aatatgcaacgtcaagcagttccgctctctcggtctgaaaagtgcattgt
tggaactgggttggaacgccaagtggctttagattcgggggttactgcta
tagccgaacatgagggaaaaatcatttataccgatactgacaagataatt
ttatcgggcaatggggatactctaaacattccattagttatataccaacg
ttccaacaaaaatacgtgtatgcaccaaaaaccccaggttcagcgaggta
aatgtattaaaaagggacaagttttagcggacggtgctgctacggttggt
ggcgaactcgctttgggaaaaaatgtattagtagcttatatgccgtggga
gggttacaattctgaagatgcggtacttattagtgagcgtctggtatatg
gagatatttatacttcttttcacataaggaaatatgaaattcagactcat
gtgacaagcaacggtcctgaaagaatcactaatgaaataccacatctaga
agcccatttactccgcaatttagacaaaaacggaattgtgaggctggggt
cttgggtaaagacgggtgatattttagtaggtaaattaacgccgcagatg
gcgaaagaatcgtcatatgctccggaagatagattattacgagccatact
tggcattcaggtatccacttcaaaggaaacttgtctaaaattaccgatag
gtggtagaggtcgagttattgatgtaagatggatccagaaaaaggggggt
tctagttataatccagaaacgattcgtgtatatatttcacaaaaacgtga
aatcaaagtaggtgataaagtagctggaagacatggaaataagggtatcg
tttcaaaaattttacctcgacaagatatgccttatttgcaagatggaaga
cctgttgatatggtcttcaacccattaggagtgccttcgcgaatgaatgt
aggacagatatttgaatgctcactcgggttagcgggaggtctgctagata
gacattatcgaatagcaccttttgatgagagatatgaacaagaggcttca
agaaaactggtgttttctgaattatatgaagctagtaagcaaacagcgaa
tccatgggtatttgaacctgagtatccgggaaaaagcagaatatttgatg
gaagaacgggggatccttttgaacaacctgttataataggaaagccttat
atcttgaaattaattcatcaagttgatgataaaatacatggacgttccag
cggacattatgcacttgttacacaacaaccccttagaggaagggccaagc
aagggggacagcgggtaggagaaatggaagtttgggctctagagggattt
ggtgttgctcatattttacaagaaatgcttacttataaatcggatcatat
tagagctcgtcaagaagtacttggtactacaatcattggagggacaatac
ctaaacccgcggatgctcccgaatcttttagattgctcgttcgagaacta
cgatctttggctctggaactgaaccatttccttgtatctgagaagaactt
ccagattaataggaaggaagcttaa

protein sequence of RPOB

>JX118043.1-RPOB.p2 ID=JX118043.1-RPOB.p2; Name=RPOB; organism=Fragaria virginiana; type=polypeptide; length=807bp
RNMNRRLNLDIPQNNTFLLPRDILAAADHLIGMKFGMGTLDDMNHLKNKR
IRSVADLLQDQFGLSLVRLENMVRGTICGAIKHKLIPTPQNLVTSTPLTT
TYESFFGLHPLSQVLDRTNPLTQIVHGRKSSYLGPGGLTGRTASFRIRDI
HPSHYGRICPIDTSEGINVGLIGSLAIHAKIGYWGSLESPFYEISERSKK
VRMLYLSPSKDEYYMIAAGNSLGLNRGIQEEQVVPARYRQEFLTVEWEQV
HLRSIFPFQYFSIGASLIPFIEHNDANRALMSSNMQRQAVPLSRSEKCIV
GTGLERQVALDSGVTAIAEHEGKIIYTDTDKIILSGNGDTLNIPLVIYQR
SNKNTCMHQKPQVQRGKCIKKGQVLADGAATVGGELALGKNVLVAYMPWE
GYNSEDAVLISERLVYGDIYTSFHIRKYEIQTHVTSNGPERITNEIPHLE
AHLLRNLDKNGIVRLGSWVKTGDILVGKLTPQMAKESSYAPEDRLLRAIL
GIQVSTSKETCLKLPIGGRGRVIDVRWIQKKGGSSYNPETIRVYISQKRE
IKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNV
GQIFECSLGLAGGLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTAN
PWVFEPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKIHGRSS
GHYALVTQQPLRGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHI
RARQEVLGTTIIGGTIPKPADAPESFRLLVRELRSLALELNHFLVSEKNF
QINRKEA

mRNA from alignment at JX118043:1666..4090-

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>JX118043.1-RPOB.m2 ID=JX118043.1-RPOB.m2; Name=RPOB; organism=Fragaria virginiana; type=mRNA; length=2425bp; location=Sequence derived from: JX118043:1666..4090- (Fragaria virginiana
ACGAAATATGAACCGAAGGCTGAATCTTGATATCCCTCAGAACAACACAT
TTTTGTTACCGCGAGATATATTGGCAGCTGCGGATCATTTGATTGGAATG
AAATTTGGAATGGGTACACTTGACGATATGAATCATTTGAAAAATAAACG
TATTCGGTCTGTCGCAGATCTTTTACAAGACCAATTTGGATTGTCCCTGG
TTCGTTTAGAAAATATGGTTAGAGGGACTATATGCGGAGCAATTAAGCAT
AAATTGATACCCACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAAC
CACTTATGAATCTTTTTTTGGATTACACCCATTATCTCAAGTTTTGGATC
GAACTAATCCATTGACCCAAATAGTTCATGGGAGAAAATCGAGTTATCTG
GGCCCTGGAGGATTGACAGGGCGAACTGCTAGTTTTCGGATACGAGATAT
TCACCCCAGTCACTACGGACGCATTTGCCCTATTGACACGTCTGAAGGAA
TCAATGTTGGACTTATTGGATCCTTAGCAATTCATGCGAAGATTGGTTAT
TGGGGGTCTCTAGAAAGTCCGTTTTATGAAATTTCTGAGAGATCAAAAAA
AGTACGGATGCTCTATTTATCACCAAGTAAAGATGAATACTATATGATAG
CGGCAGGAAATTCTTTGGGCTTGAATCGAGGTATTCAGGAAGAACAGGTT
GTTCCAGCTCGATACCGTCAAGAATTCCTGACTGTTGAATGGGAACAGGT
TCATCTTCGAAGTATTTTTCCCTTCCAATATTTTTCTATTGGAGCTTCCC
TGATTCCTTTTATTGAGCATAATGATGCGAATCGAGCTTTAATGAGTTCT
AATATGCAACGTCAAGCAGTTCCGCTCTCTCGGTCTGAAAAGTGCATTGT
TGGAACTGGGTTGGAACGCCAAGTGGCTTTAGATTCGGGGGTTACTGCTA
TAGCCGAACATGAGGGAAAAATCATTTATACCGATACTGACAAGATAATT
TTATCGGGCAATGGGGATACTCTAAACATTCCATTAGTTATATACCAACG
TTCCAACAAAAATACGTGTATGCACCAAAAACCCCAGGTTCAGCGAGGTA
AATGTATTAAAAAGGGACAAGTTTTAGCGGACGGTGCTGCTACGGTTGGT
GGCGAACTCGCTTTGGGAAAAAATGTATTAGTAGCTTATATGCCGTGGGA
GGGTTACAATTCTGAAGATGCGGTACTTATTAGTGAGCGTCTGGTATATG
GAGATATTTATACTTCTTTTCACATAAGGAAATATGAAATTCAGACTCAT
GTGACAAGCAACGGTCCTGAAAGAATCACTAATGAAATACCACATCTAGA
AGCCCATTTACTCCGCAATTTAGACAAAAACGGAATTGTGAGGCTGGGGT
CTTGGGTAAAGACGGGTGATATTTTAGTAGGTAAATTAACGCCGCAGATG
GCGAAAGAATCGTCATATGCTCCGGAAGATAGATTATTACGAGCCATACT
TGGCATTCAGGTATCCACTTCAAAGGAAACTTGTCTAAAATTACCGATAG
GTGGTAGAGGTCGAGTTATTGATGTAAGATGGATCCAGAAAAAGGGGGGT
TCTAGTTATAATCCAGAAACGATTCGTGTATATATTTCACAAAAACGTGA
AATCAAAGTAGGTGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCG
TTTCAAAAATTTTACCTCGACAAGATATGCCTTATTTGCAAGATGGAAGA
CCTGTTGATATGGTCTTCAACCCATTAGGAGTGCCTTCGCGAATGAATGT
AGGACAGATATTTGAATGCTCACTCGGGTTAGCGGGAGGTCTGCTAGATA
GACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCA
AGAAAACTGGTGTTTTCTGAATTATATGAAGCTAGTAAGCAAACAGCGAA
TCCATGGGTATTTGAACCTGAGTATCCGGGAAAAAGCAGAATATTTGATG
GAAGAACGGGGGATCCTTTTGAACAACCTGTTATAATAGGAAAGCCTTAT
ATCTTGAAATTAATTCATCAAGTTGATGATAAAATACATGGACGTTCCAG
CGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAGC
AAGGGGGACAGCGGGTAGGAGAAATGGAAGTTTGGGCTCTAGAGGGATTT
GGTGTTGCTCATATTTTACAAGAAATGCTTACTTATAAATCGGATCATAT
TAGAGCTCGTCAAGAAGTACTTGGTACTACAATCATTGGAGGGACAATAC
CTAAACCCGCGGATGCTCCCGAATCTTTTAGATTGCTCGTTCGAGAACTA
CGATCTTTGGCTCTGGAACTGAACCATTTCCTTGTATCTGAGAAGAACTT
CCAGATTAATAGGAAGGAAGCTTAA

Coding sequence (CDS) from alignment at JX118043:1666..4090-

>JX118043.1-RPOB.m2 ID=JX118043.1-RPOB.m2; Name=RPOB; organism=Fragaria virginiana; type=CDS; length=2425bp; location=Sequence derived from: JX118043:1666..4090- (Fragaria virginiana
ACGAAATATGAACCGAAGGCTGAATCTTGATATCCCTCAGAACAACACAT
TTTTGTTACCGCGAGATATATTGGCAGCTGCGGATCATTTGATTGGAATG
AAATTTGGAATGGGTACACTTGACGATATGAATCATTTGAAAAATAAACG
TATTCGGTCTGTCGCAGATCTTTTACAAGACCAATTTGGATTGTCCCTGG
TTCGTTTAGAAAATATGGTTAGAGGGACTATATGCGGAGCAATTAAGCAT
AAATTGATACCCACTCCTCAGAATTTGGTAACTTCAACTCCATTAACAAC
CACTTATGAATCTTTTTTTGGATTACACCCATTATCTCAAGTTTTGGATC
GAACTAATCCATTGACCCAAATAGTTCATGGGAGAAAATCGAGTTATCTG
GGCCCTGGAGGATTGACAGGGCGAACTGCTAGTTTTCGGATACGAGATAT
TCACCCCAGTCACTACGGACGCATTTGCCCTATTGACACGTCTGAAGGAA
TCAATGTTGGACTTATTGGATCCTTAGCAATTCATGCGAAGATTGGTTAT
TGGGGGTCTCTAGAAAGTCCGTTTTATGAAATTTCTGAGAGATCAAAAAA
AGTACGGATGCTCTATTTATCACCAAGTAAAGATGAATACTATATGATAG
CGGCAGGAAATTCTTTGGGCTTGAATCGAGGTATTCAGGAAGAACAGGTT
GTTCCAGCTCGATACCGTCAAGAATTCCTGACTGTTGAATGGGAACAGGT
TCATCTTCGAAGTATTTTTCCCTTCCAATATTTTTCTATTGGAGCTTCCC
TGATTCCTTTTATTGAGCATAATGATGCGAATCGAGCTTTAATGAGTTCT
AATATGCAACGTCAAGCAGTTCCGCTCTCTCGGTCTGAAAAGTGCATTGT
TGGAACTGGGTTGGAACGCCAAGTGGCTTTAGATTCGGGGGTTACTGCTA
TAGCCGAACATGAGGGAAAAATCATTTATACCGATACTGACAAGATAATT
TTATCGGGCAATGGGGATACTCTAAACATTCCATTAGTTATATACCAACG
TTCCAACAAAAATACGTGTATGCACCAAAAACCCCAGGTTCAGCGAGGTA
AATGTATTAAAAAGGGACAAGTTTTAGCGGACGGTGCTGCTACGGTTGGT
GGCGAACTCGCTTTGGGAAAAAATGTATTAGTAGCTTATATGCCGTGGGA
GGGTTACAATTCTGAAGATGCGGTACTTATTAGTGAGCGTCTGGTATATG
GAGATATTTATACTTCTTTTCACATAAGGAAATATGAAATTCAGACTCAT
GTGACAAGCAACGGTCCTGAAAGAATCACTAATGAAATACCACATCTAGA
AGCCCATTTACTCCGCAATTTAGACAAAAACGGAATTGTGAGGCTGGGGT
CTTGGGTAAAGACGGGTGATATTTTAGTAGGTAAATTAACGCCGCAGATG
GCGAAAGAATCGTCATATGCTCCGGAAGATAGATTATTACGAGCCATACT
TGGCATTCAGGTATCCACTTCAAAGGAAACTTGTCTAAAATTACCGATAG
GTGGTAGAGGTCGAGTTATTGATGTAAGATGGATCCAGAAAAAGGGGGGT
TCTAGTTATAATCCAGAAACGATTCGTGTATATATTTCACAAAAACGTGA
AATCAAAGTAGGTGATAAAGTAGCTGGAAGACATGGAAATAAGGGTATCG
TTTCAAAAATTTTACCTCGACAAGATATGCCTTATTTGCAAGATGGAAGA
CCTGTTGATATGGTCTTCAACCCATTAGGAGTGCCTTCGCGAATGAATGT
AGGACAGATATTTGAATGCTCACTCGGGTTAGCGGGAGGTCTGCTAGATA
GACATTATCGAATAGCACCTTTTGATGAGAGATATGAACAAGAGGCTTCA
AGAAAACTGGTGTTTTCTGAATTATATGAAGCTAGTAAGCAAACAGCGAA
TCCATGGGTATTTGAACCTGAGTATCCGGGAAAAAGCAGAATATTTGATG
GAAGAACGGGGGATCCTTTTGAACAACCTGTTATAATAGGAAAGCCTTAT
ATCTTGAAATTAATTCATCAAGTTGATGATAAAATACATGGACGTTCCAG
CGGACATTATGCACTTGTTACACAACAACCCCTTAGAGGAAGGGCCAAGC
AAGGGGGACAGCGGGTAGGAGAAATGGAAGTTTGGGCTCTAGAGGGATTT
GGTGTTGCTCATATTTTACAAGAAATGCTTACTTATAAATCGGATCATAT
TAGAGCTCGTCAAGAAGTACTTGGTACTACAATCATTGGAGGGACAATAC
CTAAACCCGCGGATGCTCCCGAATCTTTTAGATTGCTCGTTCGAGAACTA
CGATCTTTGGCTCTGGAACTGAACCATTTCCTTGTATCTGAGAAGAACTT
CCAGATTAATAGGAAGGAAGCTTAA