CBF2, JQ317158.1-CBF2.m1 (mRNA) Prunus dulcis

Transcript Overview
NameCBF2
Unique NameJQ317158.1-CBF2.m1
TypemRNA
OrganismPrunus dulcis (Almond)
Sourcegenbank
ProductC-repeat binding factor 2
Genbank NotePrdCBF2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2021-06-03
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBF2JQ317158.1-CBF2Prunus dulcisgene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
JQ317158.1-CBF2.m1-5utr1JQ317158.1-CBF2.m1-5utr1Prunus dulcisfive_prime_UTR


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
JQ317158.1-CBF2.m1-3utr1JQ317158.1-CBF2.m1-3utr1Prunus dulcisthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
JQ317158.1-CBF2.m1-cds1JQ317158.1-CBF2.m1-cds1Prunus dulcisCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBF2JQ317158.1-CBF2.p1Prunus dulcispolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI390098836
nuccoreJQ317158.1
Alignments
Feature NameTypeLocationAnalysis
JQ317158 region JQ317158:1252..2189+ NCBI Rosaceae gene and mRNA sequences
Sequences
The following sequences are available for this feature:

mRNA sequence

>JQ317158.1-CBF2.m1 ID=JQ317158.1-CBF2.m1; Name=CBF2; organism=Prunus dulcis; type=mRNA; length=717bp
atggacttgtctcaactttccgacccggtcgaccagcccgagtctagttc
tttttccgacgccagcgtcacgactcagggaccttcttggtccgacgggg
aagtcatattggcttcaagccggccgaagaagcgagccgggaggagggtt
ttcaaggagacgaggcacccggtttatcggggtgtgaggagaaggaacaa
tgacaagtgggtttgtgaaatgagagagcccaacaagaagaagtccagga
tatggctcgggacttatccgacggcggagatggctgctcgtgcccatgac
gtggccgcattggcgtttagagggaagcttgcctgcctcaactttgctga
ctccgcgttgaggctgccagtgccggcttccatggatcccatggatatta
gaagggcggccgcggaggcagctgaggggtttaggccggcggagtttggt
ggactgtgcaacggcagcagtgatgagaaggagagaatggtggtgcaggt
ggaagaggaggacaagaagggtagtgtgaacttggaaagaagcagaagct
tgagcttgtcctggtgggatgaggaggaagcgtttgacatgcccaggttg
cttcatgacatggctgaagggcttcttctttctccaccgcaacccttagg
cagcgacatgaatttggatgacatgggtaccgatgctgatatcaaattgt
ggagtttctccatttaa
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protein sequence of CBF2

>JQ317158.1-CBF2.p1 ID=JQ317158.1-CBF2.p1; Name=CBF2; organism=Prunus dulcis; type=polypeptide; length=238bp
MDLSQLSDPVDQPESSSFSDASVTTQGPSWSDGEVILASSRPKKRAGRRV
FKETRHPVYRGVRRRNNDKWVCEMREPNKKKSRIWLGTYPTAEMAARAHD
VAALAFRGKLACLNFADSALRLPVPASMDPMDIRRAAAEAAEGFRPAEFG
GLCNGSSDEKERMVVQVEEEDKKGSVNLERSRSLSLSWWDEEEAFDMPRL
LHDMAEGLLLSPPQPLGSDMNLDDMGTDADIKLWSFSI
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mRNA from alignment at JQ317158:1252..2189+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>JQ317158.1-CBF2.m1 ID=JQ317158.1-CBF2.m1; Name=CBF2; organism=Prunus dulcis; type=mRNA; length=938bp; location=Sequence derived from: JQ317158:1252..2189+ (Prunus dulcis
aatttcagcttaaaaaactcaaacaagctaaaacaccaaagcattcttgc
atatagcttactctaatggacttgtctcaactttccgacccggtcgacca
gcccgagtctagttctttttccgacgccagcgtcacgactcagggacctt
cttggtccgacggggaagtcatattggcttcaagccggccgaagaagcga
gccgggaggagggttttcaaggagacgaggcacccggtttatcggggtgt
gaggagaaggaacaatgacaagtgggtttgtgaaatgagagagcccaaca
agaagaagtccaggatatggctcgggacttatccgacggcggagatggct
gctcgtgcccatgacgtggccgcattggcgtttagagggaagcttgcctg
cctcaactttgctgactccgcgttgaggctgccagtgccggcttccatgg
atcccatggatattagaagggcggccgcggaggcagctgaggggtttagg
ccggcggagtttggtggactgtgcaacggcagcagtgatgagaaggagag
aatggtggtgcaggtggaagaggaggacaagaagggtagtgtgaacttgg
aaagaagcagaagcttgagcttgtcctggtgggatgaggaggaagcgttt
gacatgcccaggttgcttcatgacatggctgaagggcttcttctttctcc
accgcaacccttaggcagcgacatgaatttggatgacatgggtaccgatg
ctgatatcaaattgtggagtttctccatttaatcatcgacgtttatttta
gtcgattattagaatttctttgtgcgagcgattattgtttgattcttatg
catttatcaatttgtatcgaaaaagattaacgtcggtcgttcattgtgag
tggacagattggaaatatatgttttagatatttgtggt
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Coding sequence (CDS) from alignment at JQ317158:1252..2189+

>JQ317158.1-CBF2.m1 ID=JQ317158.1-CBF2.m1; Name=CBF2; organism=Prunus dulcis; type=CDS; length=717bp; location=Sequence derived from: JQ317158:1252..2189+ (Prunus dulcis
atggacttgtctcaactttccgacccggtcgaccagcccgagtctagttc
tttttccgacgccagcgtcacgactcagggaccttcttggtccgacgggg
aagtcatattggcttcaagccggccgaagaagcgagccgggaggagggtt
ttcaaggagacgaggcacccggtttatcggggtgtgaggagaaggaacaa
tgacaagtgggtttgtgaaatgagagagcccaacaagaagaagtccagga
tatggctcgggacttatccgacggcggagatggctgctcgtgcccatgac
gtggccgcattggcgtttagagggaagcttgcctgcctcaactttgctga
ctccgcgttgaggctgccagtgccggcttccatggatcccatggatatta
gaagggcggccgcggaggcagctgaggggtttaggccggcggagtttggt
ggactgtgcaacggcagcagtgatgagaaggagagaatggtggtgcaggt
ggaagaggaggacaagaagggtagtgtgaacttggaaagaagcagaagct
tgagcttgtcctggtgggatgaggaggaagcgtttgacatgcccaggttg
cttcatgacatggctgaagggcttcttctttctccaccgcaacccttagg
cagcgacatgaatttggatgacatgggtaccgatgctgatatcaaattgt
ggagtttctccatttaa
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