CS1, JQ898346.1-CS1.m1 (mRNA) Malus baccata

Transcript Overview
NameCS1
Unique NameJQ898346.1-CS1.m1
TypemRNA
OrganismMalus baccata ()
Sourcegenbank
Productcitrate synthase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2021-06-03
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
JQ898346.1-CS1.m1-cds1JQ898346.1-CS1.m1-cds1Malus baccataCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CS1JQ898346.1-CS1.p1Malus baccatapolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI388891235
nuccoreJQ898346.1
Alignments
Feature NameTypeLocationAnalysis
JQ898346 region JQ898346:1..1422+ NCBI Rosaceae gene and mRNA sequences
Chr02 chromosome Chr02:37371441..37378059- Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr2 chromosome chr2:36278964..36285584- Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr2 chromosome chr2:39941100..39947720- Malus x domestica Whole Genome v1.0p Assembly & Annotation
Sequences
The following sequences are available for this feature:

mRNA sequence

>JQ898346.1-CS1.m1 ID=JQ898346.1-CS1.m1; Name=CS1; organism=Malus baccata; type=mRNA; length=1422bp
atggtattcttcaggagcgtcaccgcgctttccaagctccgttcccgtct
tgggcaacagtcgagtctcagagattccgtcagatggacccaaacgcaga
gctccacagatcttgatcttcgttctcatttggctgaattaattcctgaa
caacaggaacgtctgaagaaactcaaggcagattatggaaaagttcaact
gggcaatatcactgttgatatggtgattggtggaatgagaggaatgacag
ggttgctgtgggaaacctccttacttgatccagatgagggaattcgcttc
aggggtttgtcaattccagaatgccagaaagtattaccagctgcaaaacc
aggtggagaacctttgcctgagggtcttctgtggctgcttttaacaggaa
aggtacctagcaaagagcaagtagatgcattatccaaggaattgaggact
cgtgccgtagttccagattatgtgtataaggccattgatgctctgcctat
tacagcacatccaatgacccagtttaccactggtgtcatggccctccagg
tagagagtgaattccagaaggcatatgaaaaggggatacataaatcaaag
tactgggagccaacttttgaggattcacttagcttgattgcacaagtgcc
agtagtagctgcctatatttatcgaagaattttcaaggatggaaaagtaa
aacagattgatggttctttggattatggtgcaaatttttcacacatgctg
ggttttgatgatcccaaagtgcatgaactcatgaggctttatgtcaccat
ccatagtgatcatgaaggtgggaatgtcagtgctcacacgggacacttgg
ttgctagtgcactttcagatccatatctttcatttgcagctgctttaaat
ggcttggctggcccactccatggtttggctaatcaggaagtattgctttg
gataaaatctgtggtagatgaagttggagagaatgtaactacagagcagt
tgaaagattacgtctggcaaacgttaaaaagtgggaaggttgttcctggt
tttggacatggagtcttgcgtaaaacagacccacgatacacatgtcaaag
ggagtttgcattgaaacacatgcctgatgatccactgtttcagttggtct
ccaagctttatgaagttgtgcctcccatacttaccgaactaggcaaggtt
aaaaacccatggcccaatgtagatgcacacagtggagttctgttgaacca
ttttggtttaactgaggcaagatattttactgttctctttggtgtatcga
ggagtatagggattggttctcagttgatatgggaccgagctcttggtttg
cctctcgaaaggcctaaaagtgtaacgatggaatcgcttgagaatttctg
caagaaagcagcttcgtcttga
back to top

protein sequence of CS1

>JQ898346.1-CS1.p1 ID=JQ898346.1-CS1.p1; Name=CS1; organism=Malus baccata; type=polypeptide; length=473bp
MVFFRSVTALSKLRSRLGQQSSLRDSVRWTQTQSSTDLDLRSHLAELIPE
QQERLKKLKADYGKVQLGNITVDMVIGGMRGMTGLLWETSLLDPDEGIRF
RGLSIPECQKVLPAAKPGGEPLPEGLLWLLLTGKVPSKEQVDALSKELRT
RAVVPDYVYKAIDALPITAHPMTQFTTGVMALQVESEFQKAYEKGIHKSK
YWEPTFEDSLSLIAQVPVVAAYIYRRIFKDGKVKQIDGSLDYGANFSHML
GFDDPKVHELMRLYVTIHSDHEGGNVSAHTGHLVASALSDPYLSFAAALN
GLAGPLHGLANQEVLLWIKSVVDEVGENVTTEQLKDYVWQTLKSGKVVPG
FGHGVLRKTDPRYTCQREFALKHMPDDPLFQLVSKLYEVVPPILTELGKV
KNPWPNVDAHSGVLLNHFGLTEARYFTVLFGVSRSIGIGSQLIWDRALGL
PLERPKSVTMESLENFCKKAASS
back to top

mRNA from alignment at JQ898346:1..1422+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>JQ898346.1-CS1.m1 ID=JQ898346.1-CS1.m1; Name=CS1; organism=Malus baccata; type=mRNA; length=1422bp; location=Sequence derived from: JQ898346:1..1422+ (Malus baccata
atggtattcttcaggagcgtcaccgcgctttccaagctccgttcccgtct
tgggcaacagtcgagtctcagagattccgtcagatggacccaaacgcaga
gctccacagatcttgatcttcgttctcatttggctgaattaattcctgaa
caacaggaacgtctgaagaaactcaaggcagattatggaaaagttcaact
gggcaatatcactgttgatatggtgattggtggaatgagaggaatgacag
ggttgctgtgggaaacctccttacttgatccagatgagggaattcgcttc
aggggtttgtcaattccagaatgccagaaagtattaccagctgcaaaacc
aggtggagaacctttgcctgagggtcttctgtggctgcttttaacaggaa
aggtacctagcaaagagcaagtagatgcattatccaaggaattgaggact
cgtgccgtagttccagattatgtgtataaggccattgatgctctgcctat
tacagcacatccaatgacccagtttaccactggtgtcatggccctccagg
tagagagtgaattccagaaggcatatgaaaaggggatacataaatcaaag
tactgggagccaacttttgaggattcacttagcttgattgcacaagtgcc
agtagtagctgcctatatttatcgaagaattttcaaggatggaaaagtaa
aacagattgatggttctttggattatggtgcaaatttttcacacatgctg
ggttttgatgatcccaaagtgcatgaactcatgaggctttatgtcaccat
ccatagtgatcatgaaggtgggaatgtcagtgctcacacgggacacttgg
ttgctagtgcactttcagatccatatctttcatttgcagctgctttaaat
ggcttggctggcccactccatggtttggctaatcaggaagtattgctttg
gataaaatctgtggtagatgaagttggagagaatgtaactacagagcagt
tgaaagattacgtctggcaaacgttaaaaagtgggaaggttgttcctggt
tttggacatggagtcttgcgtaaaacagacccacgatacacatgtcaaag
ggagtttgcattgaaacacatgcctgatgatccactgtttcagttggtct
ccaagctttatgaagttgtgcctcccatacttaccgaactaggcaaggtt
aaaaacccatggcccaatgtagatgcacacagtggagttctgttgaacca
ttttggtttaactgaggcaagatattttactgttctctttggtgtatcga
ggagtatagggattggttctcagttgatatgggaccgagctcttggtttg
cctctcgaaaggcctaaaagtgtaacgatggaatcgcttgagaatttctg
caagaaagcagcttcgtcttga
back to top

Coding sequence (CDS) from alignment at JQ898346:1..1422+

>JQ898346.1-CS1.m1 ID=JQ898346.1-CS1.m1; Name=CS1; organism=Malus baccata; type=CDS; length=1422bp; location=Sequence derived from: JQ898346:1..1422+ (Malus baccata
atggtattcttcaggagcgtcaccgcgctttccaagctccgttcccgtct
tgggcaacagtcgagtctcagagattccgtcagatggacccaaacgcaga
gctccacagatcttgatcttcgttctcatttggctgaattaattcctgaa
caacaggaacgtctgaagaaactcaaggcagattatggaaaagttcaact
gggcaatatcactgttgatatggtgattggtggaatgagaggaatgacag
ggttgctgtgggaaacctccttacttgatccagatgagggaattcgcttc
aggggtttgtcaattccagaatgccagaaagtattaccagctgcaaaacc
aggtggagaacctttgcctgagggtcttctgtggctgcttttaacaggaa
aggtacctagcaaagagcaagtagatgcattatccaaggaattgaggact
cgtgccgtagttccagattatgtgtataaggccattgatgctctgcctat
tacagcacatccaatgacccagtttaccactggtgtcatggccctccagg
tagagagtgaattccagaaggcatatgaaaaggggatacataaatcaaag
tactgggagccaacttttgaggattcacttagcttgattgcacaagtgcc
agtagtagctgcctatatttatcgaagaattttcaaggatggaaaagtaa
aacagattgatggttctttggattatggtgcaaatttttcacacatgctg
ggttttgatgatcccaaagtgcatgaactcatgaggctttatgtcaccat
ccatagtgatcatgaaggtgggaatgtcagtgctcacacgggacacttgg
ttgctagtgcactttcagatccatatctttcatttgcagctgctttaaat
ggcttggctggcccactccatggtttggctaatcaggaagtattgctttg
gataaaatctgtggtagatgaagttggagagaatgtaactacagagcagt
tgaaagattacgtctggcaaacgttaaaaagtgggaaggttgttcctggt
tttggacatggagtcttgcgtaaaacagacccacgatacacatgtcaaag
ggagtttgcattgaaacacatgcctgatgatccactgtttcagttggtct
ccaagctttatgaagttgtgcctcccatacttaccgaactaggcaaggtt
aaaaacccatggcccaatgtagatgcacacagtggagttctgttgaacca
ttttggtttaactgaggcaagatattttactgttctctttggtgtatcga
ggagtatagggattggttctcagttgatatgggaccgagctcttggtttg
cctctcgaaaggcctaaaagtgtaacgatggaatcgcttgagaatttctg
caagaaagcagcttcgtcttga
back to top