PG1, JN048111.1-PG1.m1 (mRNA) Pyrus pyrifolia

Transcript Overview


Name	PG1
Unique Name	JN048111.1-PG1.m1
Type	mRNA
Organism	Pyrus pyrifolia ()
Source	genbank
Product	polygalacturonase

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
JN048111.1-PG1.m1-cds1	JN048111.1-PG1.m1-cds1	Pyrus pyrifolia	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
PG1	JN048111.1-PG1.p1	Pyrus pyrifolia	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	354549141
nuccore	JN048111.1

Alignments

Feature Name	Type	Location	Analysis
JN048111	region	JN048111:287..1666+	NCBI Rosaceae gene and mRNA sequences
scaffold00031	supercontig	scaffold00031:191676..194071-	Pyrus communis Genome v1.0 Draft Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at JN048111:287..1666+
coding sequence from alignment at JN048111:287..1666+

mRNA sequence

>JN048111.1-PG1.m1 ID=JN048111.1-PG1.m1; Name=PG1; organism=Pyrus pyrifolia; type=mRNA; length=1380bp
atggctttacaaacacatttgttatggtcatttgttgttgtttttgttgt
ttcctttagtactacttcatgttacggtagtagtttccaggaggtcaact
cacttcatagttacattgaccatgttgataaagagtctggctacaattct
agggcttatccttcttacatggacaccactgaaggtttcaagtccatgga
attgatcagaccaagaactcagctcttcagttcaaggaagatcagcaaaa
tcgccggtggcatagcgacatcatcagctccggccaaaacgattagcgtt
gacgattttggagctaaggggaatggtgctgatgacacacaggcattttt
gaaggcatggaaggtagcttgttcttccagtggagcaatagttcttgtag
tgccacagaaaagctatcttgttaggccaactgaattctcaggcccctgc
aaatctcgacttacaatgcagatttatggaaccatagaagcatcagaaga
ccgatcaatctacaaagacctagaccactggctcatgtttgacaacgtcc
aaaacttactagttgttggtcccggaaccatcaatggcaatggaaacata
tggtggaaaaactcatgcaaaagaaagcctcagcccccttgcggtaaaca
agcccccacggctgtgaccttcaacgggtgcaataacttggtggtgaaga
atctgaagatccaagacgctcaacaaatgcatgttatgttccaaaactgc
ttcaatgttcaagcttcccttctcacagtaactgcacctgaggatagccc
caatactgatggaattcatgttgcaaatacccagaacatcactatctcga
gctcggttataggaacaggtgatgactgtatttctattgtgagtgggtct
caaagggttcaagccaaaaacataacttgtgggccaggccatggaatcag
tattggtagcttgggaaaagatggctcaaaagacaatgtttcaggagtac
ttgtaaatggagctaagctttcaggaaccaccaatggactcaggatcaag
acatggcagggtggctcaggcagtgcaaccaacattgttttccagaatgt
gcaaatgaataatgtcaccaaccccatcataatcgaccagaactactgtg
accacaaaaccaaagactgcaatcaacagaaatcggcggttcaagtgaaa
aatgtgttgtaccaaaacatcagaggaacaagtgcttccggcgacgcgat
aacggttaactgcagccaaaatgttccttgtcaggggattgtgctgcaaa
atattcaactgcagaatggaatagctgaatgcaacaatgttcagcctgct
tacaaaggagttgtctctccaagatgttag

protein sequence of PG1

>JN048111.1-PG1.p1 ID=JN048111.1-PG1.p1; Name=PG1; organism=Pyrus pyrifolia; type=polypeptide; length=459bp
MALQTHLLWSFVVVFVVSFSTTSCYGSSFQEVNSLHSYIDHVDKESGYNS
RAYPSYMDTTEGFKSMELIRPRTQLFSSRKISKIAGGIATSSAPAKTISV
DDFGAKGNGADDTQAFLKAWKVACSSSGAIVLVVPQKSYLVRPTEFSGPC
KSRLTMQIYGTIEASEDRSIYKDLDHWLMFDNVQNLLVVGPGTINGNGNI
WWKNSCKRKPQPPCGKQAPTAVTFNGCNNLVVKNLKIQDAQQMHVMFQNC
FNVQASLLTVTAPEDSPNTDGIHVANTQNITISSSVIGTGDDCISIVSGS
QRVQAKNITCGPGHGISIGSLGKDGSKDNVSGVLVNGAKLSGTTNGLRIK
TWQGGSGSATNIVFQNVQMNNVTNPIIIDQNYCDHKTKDCNQQKSAVQVK
NVLYQNIRGTSASGDAITVNCSQNVPCQGIVLQNIQLQNGIAECNNVQPA
YKGVVSPRC

mRNA from alignment at JN048111:287..1666+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>JN048111.1-PG1.m1 ID=JN048111.1-PG1.m1; Name=PG1; organism=Pyrus pyrifolia; type=mRNA; length=1380bp; location=Sequence derived from: JN048111:287..1666+ (Pyrus pyrifolia
atggctttacaaacacatttgttatggtcatttgttgttgtttttgttgt
ttcctttagtactacttcatgttacggtagtagtttccaggaggtcaact
cacttcatagttacattgaccatgttgataaagagtctggctacaattct
agggcttatccttcttacatggacaccactgaaggtttcaagtccatgga
attgatcagaccaagaactcagctcttcagttcaaggaagatcagcaaaa
tcgccggtggcatagcgacatcatcagctccggccaaaacgattagcgtt
gacgattttggagctaaggggaatggtgctgatgacacacaggcattttt
gaaggcatggaaggtagcttgttcttccagtggagcaatagttcttgtag
tgccacagaaaagctatcttgttaggccaactgaattctcaggcccctgc
aaatctcgacttacaatgcagatttatggaaccatagaagcatcagaaga
ccgatcaatctacaaagacctagaccactggctcatgtttgacaacgtcc
aaaacttactagttgttggtcccggaaccatcaatggcaatggaaacata
tggtggaaaaactcatgcaaaagaaagcctcagcccccttgcggtaaaca
agcccccacggctgtgaccttcaacgggtgcaataacttggtggtgaaga
atctgaagatccaagacgctcaacaaatgcatgttatgttccaaaactgc
ttcaatgttcaagcttcccttctcacagtaactgcacctgaggatagccc
caatactgatggaattcatgttgcaaatacccagaacatcactatctcga
gctcggttataggaacaggtgatgactgtatttctattgtgagtgggtct
caaagggttcaagccaaaaacataacttgtgggccaggccatggaatcag
tattggtagcttgggaaaagatggctcaaaagacaatgtttcaggagtac
ttgtaaatggagctaagctttcaggaaccaccaatggactcaggatcaag
acatggcagggtggctcaggcagtgcaaccaacattgttttccagaatgt
gcaaatgaataatgtcaccaaccccatcataatcgaccagaactactgtg
accacaaaaccaaagactgcaatcaacagaaatcggcggttcaagtgaaa
aatgtgttgtaccaaaacatcagaggaacaagtgcttccggcgacgcgat
aacggttaactgcagccaaaatgttccttgtcaggggattgtgctgcaaa
atattcaactgcagaatggaatagctgaatgcaacaatgttcagcctgct
tacaaaggagttgtctctccaagatgttag

Coding sequence (CDS) from alignment at JN048111:287..1666+

>JN048111.1-PG1.m1 ID=JN048111.1-PG1.m1; Name=PG1; organism=Pyrus pyrifolia; type=CDS; length=1380bp; location=Sequence derived from: JN048111:287..1666+ (Pyrus pyrifolia
atggctttacaaacacatttgttatggtcatttgttgttgtttttgttgt
ttcctttagtactacttcatgttacggtagtagtttccaggaggtcaact
cacttcatagttacattgaccatgttgataaagagtctggctacaattct
agggcttatccttcttacatggacaccactgaaggtttcaagtccatgga
attgatcagaccaagaactcagctcttcagttcaaggaagatcagcaaaa
tcgccggtggcatagcgacatcatcagctccggccaaaacgattagcgtt
gacgattttggagctaaggggaatggtgctgatgacacacaggcattttt
gaaggcatggaaggtagcttgttcttccagtggagcaatagttcttgtag
tgccacagaaaagctatcttgttaggccaactgaattctcaggcccctgc
aaatctcgacttacaatgcagatttatggaaccatagaagcatcagaaga
ccgatcaatctacaaagacctagaccactggctcatgtttgacaacgtcc
aaaacttactagttgttggtcccggaaccatcaatggcaatggaaacata
tggtggaaaaactcatgcaaaagaaagcctcagcccccttgcggtaaaca
agcccccacggctgtgaccttcaacgggtgcaataacttggtggtgaaga
atctgaagatccaagacgctcaacaaatgcatgttatgttccaaaactgc
ttcaatgttcaagcttcccttctcacagtaactgcacctgaggatagccc
caatactgatggaattcatgttgcaaatacccagaacatcactatctcga
gctcggttataggaacaggtgatgactgtatttctattgtgagtgggtct
caaagggttcaagccaaaaacataacttgtgggccaggccatggaatcag
tattggtagcttgggaaaagatggctcaaaagacaatgtttcaggagtac
ttgtaaatggagctaagctttcaggaaccaccaatggactcaggatcaag
acatggcagggtggctcaggcagtgcaaccaacattgttttccagaatgt
gcaaatgaataatgtcaccaaccccatcataatcgaccagaactactgtg
accacaaaaccaaagactgcaatcaacagaaatcggcggttcaagtgaaa
aatgtgttgtaccaaaacatcagaggaacaagtgcttccggcgacgcgat
aacggttaactgcagccaaaatgttccttgtcaggggattgtgctgcaaa
atattcaactgcagaatggaatagctgaatgcaacaatgttcagcctgct
tacaaaggagttgtctctccaagatgttag