PAL, JQ248934.1-PAL.m1 (mRNA) Malus hybrid cultivar

Transcript Overview


Name	PAL
Unique Name	JQ248934.1-PAL.m1
Type	mRNA
Organism	Malus hybrid cultivar ()
Source	genbank
Product	phenylalanine ammonialyase

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
JQ248934.1-PAL.m1-cds1	JQ248934.1-PAL.m1-cds1	Malus hybrid cultivar	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
PAL	JQ248934.1-PAL.p1	Malus hybrid cultivar	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	382929313
nuccore	JQ248934.1

Alignments

Feature Name	Type	Location	Analysis
JQ248934	region	JQ248934:1..2163+	NCBI Rosaceae gene and mRNA sequences
chr12	chromosome	chr12:15419441..15422858-	Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr12	chromosome	chr12:18579966..18583383-	Malus x domestica Whole Genome v1.0p Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at JQ248934:1..2163+
coding sequence from alignment at JQ248934:1..2163+

mRNA sequence

>JQ248934.1-PAL.m1 ID=JQ248934.1-PAL.m1; Name=PAL; organism=Malus hybrid cultivar; type=mRNA; length=2163bp
atggaggcggaaaccatcacgcaaaatgggaaaaaaggccaccaccagaa
cggtgctgtggagtccccgctttgcattaaaaaggacccgttgaactggg
gtctagcggcggattcactaaaagggagccacttggatgaagtgaagcgt
atggtggcggagtacagaaagccggtggtgaagctcggcggagagagcct
caccatttcccaagttgcagccatagccactcatgacaccggggtcaagg
ttgagctctctgagtcggccagggctggggtcaaggccagcagtgattgg
gtcatggacagcatgggcaaagggactgacagctacggtgtcaccaccgg
gtttggtgcgacctcccaccggagaacaaagcaaggcgctgcccttcaga
aggagctaattagattcttgaacgctggtgtgtttggaagtgctacagaa
tcaggccacacactaccacatcaagcaactagagcagccatgttggtcag
aatcaacacactcctccaaggctactctggcataagattcgaaatcttgg
aagccatcaccaagttcttgaacagcaacgtcactccatgcttgccccta
cggggcacgattaccgcctctggtgatcttgtcccgctgccctacgttgc
cggtttactcaccggcaggccaaactccaaagctgtcggaccaaacggtc
agaccctcaatgcctctgaagcttttgagctagtagggatcgattctggg
tttttcgagttgcagcctaaagaagggttagctcttgtgaacggtactgc
tgttggttctggcttggcctccaccgttcttttcgagaccaacattttgg
cattgcttgcggagattttatcagcgattttcgctgaagtaatgcagggg
aaaccggagtttactgatcacttgacgcacaagttgaagcaccaccctgg
acagattgaggcagctgcaattatggaacatattttggatggcagctctt
atgtcaaagctgctaagaagttacatgagcaggatcccctgcagaagcca
aagcaggatcgctacgctctccgaacatcacctcagtggctgggacctca
aattgaagtgattcgtttctccaccaaatccattgagagggagatcaact
cggttaatgacaaccctttgattgatgtttcgaggaacaaggccttacat
ggaggcaacttccaggggaccccaattggggtttccatggacaacactcg
cttggcgattgcatccattggcaagctcatgtttgcacaattttctaaac
ttgtcaacgacttttacaacaatggtttgccttcaaatctgtcgggaggc
aggaatcctagcttggattacggtttcaagggggctgaaatcgccatggc
atcttattgttccgagctgcagtttctcgcaaatccggttactaaccatg
tacagagtgctgagcagcacaaccaagatgtaaactctttggggttgatc
tcttcaagaaagacagctgaagcggttgatatcttgaagctcatgtcttc
cacatttttggttgcgctttgtcagtccgtcgatttgaggcatttggagg
agaacttgaggaacaccgtaaagaacacggtgagccaagtcgcaaagagg
actttaacaactggggtaaatggggagcttcacccctcaagattctgcga
gaaggatctcctcaaagttgtcgatagggagtatgtttttgcctatattg
atgacccctgcagcgccacttatccattgatgcaaaaactgaggcaagtg
cttgttgagcatgctttgacaaatggcgagagtgagaagaatgcaagcac
ttcaatcttccaaaaaatcggagcttttgaggaagagctgaaagcgcttt
tgcctaaagaggtggagagcgcaaggagtgcaattgagagcggaaacgct
gcagttccaaacaggattgcggaatgcaggtcttatcccttgtacaaatt
tgtgagggaggagttgggaggagagtacctgaccggggagaaggtcaggt
caccgggcgaggagtgtgacaaggtgttccaagctatctgccagggaaag
attatcgacccgattttaggttgcctcgagggttggaacggagcacctct
tcctatctgttag

protein sequence of PAL

>JQ248934.1-PAL.p1 ID=JQ248934.1-PAL.p1; Name=PAL; organism=Malus hybrid cultivar; type=polypeptide; length=720bp
MEAETITQNGKKGHHQNGAVESPLCIKKDPLNWGLAADSLKGSHLDEVKR
MVAEYRKPVVKLGGESLTISQVAAIATHDTGVKVELSESARAGVKASSDW
VMDSMGKGTDSYGVTTGFGATSHRRTKQGAALQKELIRFLNAGVFGSATE
SGHTLPHQATRAAMLVRINTLLQGYSGIRFEILEAITKFLNSNVTPCLPL
RGTITASGDLVPLPYVAGLLTGRPNSKAVGPNGQTLNASEAFELVGIDSG
FFELQPKEGLALVNGTAVGSGLASTVLFETNILALLAEILSAIFAEVMQG
KPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAKKLHEQDPLQKP
KQDRYALRTSPQWLGPQIEVIRFSTKSIEREINSVNDNPLIDVSRNKALH
GGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSKLVNDFYNNGLPSNLSGG
RNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLI
SSRKTAEAVDILKLMSSTFLVALCQSVDLRHLEENLRNTVKNTVSQVAKR
TLTTGVNGELHPSRFCEKDLLKVVDREYVFAYIDDPCSATYPLMQKLRQV
LVEHALTNGESEKNASTSIFQKIGAFEEELKALLPKEVESARSAIESGNA
AVPNRIAECRSYPLYKFVREELGGEYLTGEKVRSPGEECDKVFQAICQGK
IIDPILGCLEGWNGAPLPIC

mRNA from alignment at JQ248934:1..2163+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>JQ248934.1-PAL.m1 ID=JQ248934.1-PAL.m1; Name=PAL; organism=Malus hybrid cultivar; type=mRNA; length=2163bp; location=Sequence derived from: JQ248934:1..2163+ (Malus hybrid cultivar
atggaggcggaaaccatcacgcaaaatgggaaaaaaggccaccaccagaa
cggtgctgtggagtccccgctttgcattaaaaaggacccgttgaactggg
gtctagcggcggattcactaaaagggagccacttggatgaagtgaagcgt
atggtggcggagtacagaaagccggtggtgaagctcggcggagagagcct
caccatttcccaagttgcagccatagccactcatgacaccggggtcaagg
ttgagctctctgagtcggccagggctggggtcaaggccagcagtgattgg
gtcatggacagcatgggcaaagggactgacagctacggtgtcaccaccgg
gtttggtgcgacctcccaccggagaacaaagcaaggcgctgcccttcaga
aggagctaattagattcttgaacgctggtgtgtttggaagtgctacagaa
tcaggccacacactaccacatcaagcaactagagcagccatgttggtcag
aatcaacacactcctccaaggctactctggcataagattcgaaatcttgg
aagccatcaccaagttcttgaacagcaacgtcactccatgcttgccccta
cggggcacgattaccgcctctggtgatcttgtcccgctgccctacgttgc
cggtttactcaccggcaggccaaactccaaagctgtcggaccaaacggtc
agaccctcaatgcctctgaagcttttgagctagtagggatcgattctggg
tttttcgagttgcagcctaaagaagggttagctcttgtgaacggtactgc
tgttggttctggcttggcctccaccgttcttttcgagaccaacattttgg
cattgcttgcggagattttatcagcgattttcgctgaagtaatgcagggg
aaaccggagtttactgatcacttgacgcacaagttgaagcaccaccctgg
acagattgaggcagctgcaattatggaacatattttggatggcagctctt
atgtcaaagctgctaagaagttacatgagcaggatcccctgcagaagcca
aagcaggatcgctacgctctccgaacatcacctcagtggctgggacctca
aattgaagtgattcgtttctccaccaaatccattgagagggagatcaact
cggttaatgacaaccctttgattgatgtttcgaggaacaaggccttacat
ggaggcaacttccaggggaccccaattggggtttccatggacaacactcg
cttggcgattgcatccattggcaagctcatgtttgcacaattttctaaac
ttgtcaacgacttttacaacaatggtttgccttcaaatctgtcgggaggc
aggaatcctagcttggattacggtttcaagggggctgaaatcgccatggc
atcttattgttccgagctgcagtttctcgcaaatccggttactaaccatg
tacagagtgctgagcagcacaaccaagatgtaaactctttggggttgatc
tcttcaagaaagacagctgaagcggttgatatcttgaagctcatgtcttc
cacatttttggttgcgctttgtcagtccgtcgatttgaggcatttggagg
agaacttgaggaacaccgtaaagaacacggtgagccaagtcgcaaagagg
actttaacaactggggtaaatggggagcttcacccctcaagattctgcga
gaaggatctcctcaaagttgtcgatagggagtatgtttttgcctatattg
atgacccctgcagcgccacttatccattgatgcaaaaactgaggcaagtg
cttgttgagcatgctttgacaaatggcgagagtgagaagaatgcaagcac
ttcaatcttccaaaaaatcggagcttttgaggaagagctgaaagcgcttt
tgcctaaagaggtggagagcgcaaggagtgcaattgagagcggaaacgct
gcagttccaaacaggattgcggaatgcaggtcttatcccttgtacaaatt
tgtgagggaggagttgggaggagagtacctgaccggggagaaggtcaggt
caccgggcgaggagtgtgacaaggtgttccaagctatctgccagggaaag
attatcgacccgattttaggttgcctcgagggttggaacggagcacctct
tcctatctgttag

Coding sequence (CDS) from alignment at JQ248934:1..2163+

>JQ248934.1-PAL.m1 ID=JQ248934.1-PAL.m1; Name=PAL; organism=Malus hybrid cultivar; type=CDS; length=2163bp; location=Sequence derived from: JQ248934:1..2163+ (Malus hybrid cultivar
atggaggcggaaaccatcacgcaaaatgggaaaaaaggccaccaccagaa
cggtgctgtggagtccccgctttgcattaaaaaggacccgttgaactggg
gtctagcggcggattcactaaaagggagccacttggatgaagtgaagcgt
atggtggcggagtacagaaagccggtggtgaagctcggcggagagagcct
caccatttcccaagttgcagccatagccactcatgacaccggggtcaagg
ttgagctctctgagtcggccagggctggggtcaaggccagcagtgattgg
gtcatggacagcatgggcaaagggactgacagctacggtgtcaccaccgg
gtttggtgcgacctcccaccggagaacaaagcaaggcgctgcccttcaga
aggagctaattagattcttgaacgctggtgtgtttggaagtgctacagaa
tcaggccacacactaccacatcaagcaactagagcagccatgttggtcag
aatcaacacactcctccaaggctactctggcataagattcgaaatcttgg
aagccatcaccaagttcttgaacagcaacgtcactccatgcttgccccta
cggggcacgattaccgcctctggtgatcttgtcccgctgccctacgttgc
cggtttactcaccggcaggccaaactccaaagctgtcggaccaaacggtc
agaccctcaatgcctctgaagcttttgagctagtagggatcgattctggg
tttttcgagttgcagcctaaagaagggttagctcttgtgaacggtactgc
tgttggttctggcttggcctccaccgttcttttcgagaccaacattttgg
cattgcttgcggagattttatcagcgattttcgctgaagtaatgcagggg
aaaccggagtttactgatcacttgacgcacaagttgaagcaccaccctgg
acagattgaggcagctgcaattatggaacatattttggatggcagctctt
atgtcaaagctgctaagaagttacatgagcaggatcccctgcagaagcca
aagcaggatcgctacgctctccgaacatcacctcagtggctgggacctca
aattgaagtgattcgtttctccaccaaatccattgagagggagatcaact
cggttaatgacaaccctttgattgatgtttcgaggaacaaggccttacat
ggaggcaacttccaggggaccccaattggggtttccatggacaacactcg
cttggcgattgcatccattggcaagctcatgtttgcacaattttctaaac
ttgtcaacgacttttacaacaatggtttgccttcaaatctgtcgggaggc
aggaatcctagcttggattacggtttcaagggggctgaaatcgccatggc
atcttattgttccgagctgcagtttctcgcaaatccggttactaaccatg
tacagagtgctgagcagcacaaccaagatgtaaactctttggggttgatc
tcttcaagaaagacagctgaagcggttgatatcttgaagctcatgtcttc
cacatttttggttgcgctttgtcagtccgtcgatttgaggcatttggagg
agaacttgaggaacaccgtaaagaacacggtgagccaagtcgcaaagagg
actttaacaactggggtaaatggggagcttcacccctcaagattctgcga
gaaggatctcctcaaagttgtcgatagggagtatgtttttgcctatattg
atgacccctgcagcgccacttatccattgatgcaaaaactgaggcaagtg
cttgttgagcatgctttgacaaatggcgagagtgagaagaatgcaagcac
ttcaatcttccaaaaaatcggagcttttgaggaagagctgaaagcgcttt
tgcctaaagaggtggagagcgcaaggagtgcaattgagagcggaaacgct
gcagttccaaacaggattgcggaatgcaggtcttatcccttgtacaaatt
tgtgagggaggagttgggaggagagtacctgaccggggagaaggtcaggt
caccgggcgaggagtgtgacaaggtgttccaagctatctgccagggaaag
attatcgacccgattttaggttgcctcgagggttggaacggagcacctct
tcctatctgttag