HCT2, JQ280304.1-HCT2.m1 (mRNA) Pyrus x bretschneideri

Transcript Overview
NameHCT2
Unique NameJQ280304.1-HCT2.m1
TypemRNA
OrganismPyrus x bretschneideri ()
Sourcegenbank
Producthydroxycinnamoyl-coenzyme A shikimate/quinate hydroxycinnamoyltransferase 2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
JQ280304regionJQ280304:13..1380 +NCBI Rosaceae gene and mRNA sequencesn/a
scaffold02625supercontigHCT2:1..1368 .
scaffold02625:32215..33582 +		n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2021-06-03
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
JQ280304.1-HCT2.m1-cds1JQ280304.1-HCT2.m1-cds1Pyrus x bretschneideriCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
HCT2JQ280304.1-HCT2.p1Pyrus x bretschneideripolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI381141806
nuccoreJQ280304.1
Sequences
The following sequences are available for this feature:

mRNA sequence

>JQ280304.1-HCT2.m1 ID=JQ280304.1-HCT2.m1; Name=HCT2; organism=Pyrus x bretschneideri; type=mRNA; length=1368bp
atggtggtgaaattcaaagactgctgtgcagtgaaaccctctcagccaac
atggcaaggttgcctaactctgtcggaatgggatcaagtcggcctcataa
ctcatgttcccacaatctacttctataaaccagaccataactttgtcaca
tcatctgacaccatcgcaaacaccctcaaagactcattaagtcgtgcact
ggtgacgttctatccactagcaggtcgtttgcattggattggcggaggcc
gccttgagcttgattgcaatgctgtgggggttcgattcattgaagctgag
tctagttcaaaactcgacgactttggtgacttctctccttctccagaata
tcactatcttatcccaactctggactacaccctcccaattcatgaacttc
cgatattgcttgtgcaattgactacgttcaaatgtggtggtgttagtctt
agcttgacaatatcacatgctgttgttgatgggcaaagtgcattgcattt
tatttctgagtgggctaggcttgcaaggggtgagccaattgaggtgatgc
catttcttgatcgaaaagtctttcaagctttaaacatcccagctggaagt
gctactctagggcttgaccattcagagttcaaccatcctccctttttact
tgggcaagcagataatactgaggagaggaagaagaagaccactgtcgcca
tgttgagtcttactaaagatcaagttgagaagcttaagcggatggcgaat
gagggtaccaatttcaacaactctgacactaagcgagcttacacgcggta
tgagtccgtggctggacacatctggagatgtgcttctaaagctagagatc
acaaaaatgaacagcctacagctatgggggtttgtgttgactcgcggaat
cgcatgcaacccccactgccacaaggatactttgggaacgcaacgtttga
tgtaattgctacgagtcttgctggtgacttggttaccaagcccttagggt
acgcatcaagtagaataagggaggcgatcgagaaagtgacgaacgattat
gtgctgtcagcaattgataacttgaggaaccaaccggacttgactaggtt
ccaagatcttcatgctctagggagtgaccagggacctttttatggaaacc
ctaatcttggggtagtgagctggttgacactgcctctatatggtcttgat
tttggatggggaaaggagatttatatgggtcccggaacgcatgattttga
tgggcactctctgatccttccaagtcctgatggaaatggttctgcgattg
tggccttgtgtctacaagttgcccatatggatgcttttaagaagcatttc
tatgaagatattatatga
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protein sequence of HCT2

>JQ280304.1-HCT2.p1 ID=JQ280304.1-HCT2.p1; Name=HCT2; organism=Pyrus x bretschneideri; type=polypeptide; length=455bp
MVVKFKDCCAVKPSQPTWQGCLTLSEWDQVGLITHVPTIYFYKPDHNFVT
SSDTIANTLKDSLSRALVTFYPLAGRLHWIGGGRLELDCNAVGVRFIEAE
SSSKLDDFGDFSPSPEYHYLIPTLDYTLPIHELPILLVQLTTFKCGGVSL
SLTISHAVVDGQSALHFISEWARLARGEPIEVMPFLDRKVFQALNIPAGS
ATLGLDHSEFNHPPFLLGQADNTEERKKKTTVAMLSLTKDQVEKLKRMAN
EGTNFNNSDTKRAYTRYESVAGHIWRCASKARDHKNEQPTAMGVCVDSRN
RMQPPLPQGYFGNATFDVIATSLAGDLVTKPLGYASSRIREAIEKVTNDY
VLSAIDNLRNQPDLTRFQDLHALGSDQGPFYGNPNLGVVSWLTLPLYGLD
FGWGKEIYMGPGTHDFDGHSLILPSPDGNGSAIVALCLQVAHMDAFKKHF
YEDII
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mRNA from alignment at JQ280304:13..1380+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>JQ280304.1-HCT2.m1 ID=JQ280304.1-HCT2.m1; Name=HCT2; organism=Pyrus x bretschneideri; type=mRNA; length=1368bp; location=Sequence derived from: JQ280304:13..1380+ (Pyrus x bretschneideri
atggtggtgaaattcaaagactgctgtgcagtgaaaccctctcagccaac
atggcaaggttgcctaactctgtcggaatgggatcaagtcggcctcataa
ctcatgttcccacaatctacttctataaaccagaccataactttgtcaca
tcatctgacaccatcgcaaacaccctcaaagactcattaagtcgtgcact
ggtgacgttctatccactagcaggtcgtttgcattggattggcggaggcc
gccttgagcttgattgcaatgctgtgggggttcgattcattgaagctgag
tctagttcaaaactcgacgactttggtgacttctctccttctccagaata
tcactatcttatcccaactctggactacaccctcccaattcatgaacttc
cgatattgcttgtgcaattgactacgttcaaatgtggtggtgttagtctt
agcttgacaatatcacatgctgttgttgatgggcaaagtgcattgcattt
tatttctgagtgggctaggcttgcaaggggtgagccaattgaggtgatgc
catttcttgatcgaaaagtctttcaagctttaaacatcccagctggaagt
gctactctagggcttgaccattcagagttcaaccatcctccctttttact
tgggcaagcagataatactgaggagaggaagaagaagaccactgtcgcca
tgttgagtcttactaaagatcaagttgagaagcttaagcggatggcgaat
gagggtaccaatttcaacaactctgacactaagcgagcttacacgcggta
tgagtccgtggctggacacatctggagatgtgcttctaaagctagagatc
acaaaaatgaacagcctacagctatgggggtttgtgttgactcgcggaat
cgcatgcaacccccactgccacaaggatactttgggaacgcaacgtttga
tgtaattgctacgagtcttgctggtgacttggttaccaagcccttagggt
acgcatcaagtagaataagggaggcgatcgagaaagtgacgaacgattat
gtgctgtcagcaattgataacttgaggaaccaaccggacttgactaggtt
ccaagatcttcatgctctagggagtgaccagggacctttttatggaaacc
ctaatcttggggtagtgagctggttgacactgcctctatatggtcttgat
tttggatggggaaaggagatttatatgggtcccggaacgcatgattttga
tgggcactctctgatccttccaagtcctgatggaaatggttctgcgattg
tggccttgtgtctacaagttgcccatatggatgcttttaagaagcatttc
tatgaagatattatatga
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Coding sequence (CDS) from alignment at JQ280304:13..1380+

>JQ280304.1-HCT2.m1 ID=JQ280304.1-HCT2.m1; Name=HCT2; organism=Pyrus x bretschneideri; type=CDS; length=1368bp; location=Sequence derived from: JQ280304:13..1380+ (Pyrus x bretschneideri
atggtggtgaaattcaaagactgctgtgcagtgaaaccctctcagccaac
atggcaaggttgcctaactctgtcggaatgggatcaagtcggcctcataa
ctcatgttcccacaatctacttctataaaccagaccataactttgtcaca
tcatctgacaccatcgcaaacaccctcaaagactcattaagtcgtgcact
ggtgacgttctatccactagcaggtcgtttgcattggattggcggaggcc
gccttgagcttgattgcaatgctgtgggggttcgattcattgaagctgag
tctagttcaaaactcgacgactttggtgacttctctccttctccagaata
tcactatcttatcccaactctggactacaccctcccaattcatgaacttc
cgatattgcttgtgcaattgactacgttcaaatgtggtggtgttagtctt
agcttgacaatatcacatgctgttgttgatgggcaaagtgcattgcattt
tatttctgagtgggctaggcttgcaaggggtgagccaattgaggtgatgc
catttcttgatcgaaaagtctttcaagctttaaacatcccagctggaagt
gctactctagggcttgaccattcagagttcaaccatcctccctttttact
tgggcaagcagataatactgaggagaggaagaagaagaccactgtcgcca
tgttgagtcttactaaagatcaagttgagaagcttaagcggatggcgaat
gagggtaccaatttcaacaactctgacactaagcgagcttacacgcggta
tgagtccgtggctggacacatctggagatgtgcttctaaagctagagatc
acaaaaatgaacagcctacagctatgggggtttgtgttgactcgcggaat
cgcatgcaacccccactgccacaaggatactttgggaacgcaacgtttga
tgtaattgctacgagtcttgctggtgacttggttaccaagcccttagggt
acgcatcaagtagaataagggaggcgatcgagaaagtgacgaacgattat
gtgctgtcagcaattgataacttgaggaaccaaccggacttgactaggtt
ccaagatcttcatgctctagggagtgaccagggacctttttatggaaacc
ctaatcttggggtagtgagctggttgacactgcctctatatggtcttgat
tttggatggggaaaggagatttatatgggtcccggaacgcatgattttga
tgggcactctctgatccttccaagtcctgatggaaatggttctgcgattg
tggccttgtgtctacaagttgcccatatggatgcttttaagaagcatttc
tatgaagatattatatga
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