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Transcript Overview
| Name | COX2 |
|---|
| Unique Name | AB588943.1-COX2.m1 |
|---|
| Type | mRNA |
|---|
| Organism | Malus x domestica (Apple) |
|---|
| Source | genbank |
|---|
| Product | cytochrome c oxidase subunit 1 |
|---|
| Genbank Note | Protein sequence is in conflict with the conceptual translation |
|---|
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| AB588943.1-COX2.m1-cds1 | AB588943.1-COX2.m1-cds1 | Malus x domestica | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| COX2 | AB588943.1-COX2.p1 | Malus x domestica | polypeptide |
Cross References
External references for this mRNA
Alignments
| Feature Name | Type | Location | Analysis |
|---|
| AB588943 |
region |
AB588943:1239..2804+ |
NCBI Rosaceae gene and mRNA sequences |
Sequences
The
following sequences are available for this feature:
mRNA sequence >AB588943.1-COX2.m1 ID=AB588943.1-COX2.m1; Name=COX2; organism=Malus x domestica; type=mRNA; length=1566bp
acgacacgatggctgttctccactaaccacaaggatatagggactctata
tttcatcttcggtgctattgctggagtgatgggcacatgcttctcagtac
tgattcgtatggaattagcacgacccggcgatcaaattcttggtggtaat
catcaactttataatgttttaataacggctcacgcttttttaatgatctt
ttttatggttatgccggcgatgataggcggatctggtaattggtctgttc
cgattctgataggtgcacctgacatggcatttccacgattaaataatatt
tcattctggttgttgccacctagtctcttgctcctattaagctcagcctt
agtagaagtgggtagcggcactgggtggacggtctatccgcccttaagtg
gtattaccagccattctggaggagctgttgatttagcaatttctagtctt
catctatctggtgtttcatccattttaggttctatcaattttataacaac
tatctccaacatgcgtggacctggaatgactatgcatagatcacccctat
ttgtgtggtccgttctagtgacagcattcctacttttattatcacttccg
gtactggcgggggcaattaccatgttattaaccgatcgaaactttaatac
aaccttttctgatcccgctggagggggagaccccatattataccagcatc
tctttcggttctttggtcatccagaagtgtatattcccattctgcctgga
tccggtatcataagtcatatcgtttcgactttttcgggaaaaccggtctt
cgggtatctaggcatggtttatgccatgatcagtacaggtgttcttggat
ttcttgtttgggctcatcatatgtttactgtgggcttagacgttgatacc
cgtgcctactttaccgcagctaccatgatcatagccgtccccactggaat
aaaaatctttagttggatcgctaccatgtgggggggctcgatacaataca
aaacacccatgttatttgctgtagggttcatctttttgttcaccatagga
ggactcactggaatagtcctggcaaattctgggctagacattgctctaca
tgatacttattatgtggttgcacatttccattatgtactttctatgggag
ccgtttttgctttatttgcaggatttcactattgggtgggtaaaatcttt
ggtcggacataccctgaaactttagggcaaatacatttttggatcacttt
tttcggggttaatctgaccttctttccaatgcatttcttaggcctttcgg
gtatgccacgtcgcattccagattatccggatgcttacgctgggtggaat
gccattagcagttttggctcttacatatccgtagttgggattcgtcgttt
cttcgtggtcgtaacaatcacttcaagcagtggaaataacaaaagatgcg
ctccaagtccttgggctgttgaacagaattcaaccacactggaatggatg
gtacaaagtcctccagcttttcatacttttggagaacttccagctatcaa
ggaaaccgtgaagtaa back to topprotein sequence of COX2 >AB588943.1-COX2.p1 ID=AB588943.1-COX2.p1; Name=COX2; organism=Malus x domestica; type=polypeptide; length=521bp
MTRWLFSTNHKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGN
HQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNI
SFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSL
HLSGVSSILGSINFITTISNMRGPGMTMHRLPLFVWSVLVTAFLLLLSLP
VLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPG
FGIISHIVSTFSGKPVFGYLGMVYAMISIGVLGFLVWAHHMFTVGLDVDT
RAYFTAATMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIG
GLTGIVLANSGLDIALHDTYYVVAHFHYVLSMGAVFALFAGFYYWVGKIF
GRTYPETLGQIHFWITFFGVNLTFFPMHFLGLSGMPRRIPDYPDAYAGWN
AISSFGSYISVVGICCFFVVVTITLSSGNNKRCAPSPWAVEQNSTTLEWM
VQSPPAFHTFGELPAIKETVK back to topmRNA from alignment at AB588943:1239..2804+ Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below. >AB588943.1-COX2.m1 ID=AB588943.1-COX2.m1; Name=COX2; organism=Malus x domestica; type=mRNA; length=1566bp; location=Sequence derived from: AB588943:1239..2804+ (Malus x domestica
acgacacgatggctgttctccactaaccacaaggatatagggactctata
tttcatcttcggtgctattgctggagtgatgggcacatgcttctcagtac
tgattcgtatggaattagcacgacccggcgatcaaattcttggtggtaat
catcaactttataatgttttaataacggctcacgcttttttaatgatctt
ttttatggttatgccggcgatgataggcggatctggtaattggtctgttc
cgattctgataggtgcacctgacatggcatttccacgattaaataatatt
tcattctggttgttgccacctagtctcttgctcctattaagctcagcctt
agtagaagtgggtagcggcactgggtggacggtctatccgcccttaagtg
gtattaccagccattctggaggagctgttgatttagcaatttctagtctt
catctatctggtgtttcatccattttaggttctatcaattttataacaac
tatctccaacatgcgtggacctggaatgactatgcatagatcacccctat
ttgtgtggtccgttctagtgacagcattcctacttttattatcacttccg
gtactggcgggggcaattaccatgttattaaccgatcgaaactttaatac
aaccttttctgatcccgctggagggggagaccccatattataccagcatc
tctttcggttctttggtcatccagaagtgtatattcccattctgcctgga
tccggtatcataagtcatatcgtttcgactttttcgggaaaaccggtctt
cgggtatctaggcatggtttatgccatgatcagtacaggtgttcttggat
ttcttgtttgggctcatcatatgtttactgtgggcttagacgttgatacc
cgtgcctactttaccgcagctaccatgatcatagccgtccccactggaat
aaaaatctttagttggatcgctaccatgtgggggggctcgatacaataca
aaacacccatgttatttgctgtagggttcatctttttgttcaccatagga
ggactcactggaatagtcctggcaaattctgggctagacattgctctaca
tgatacttattatgtggttgcacatttccattatgtactttctatgggag
ccgtttttgctttatttgcaggatttcactattgggtgggtaaaatcttt
ggtcggacataccctgaaactttagggcaaatacatttttggatcacttt
tttcggggttaatctgaccttctttccaatgcatttcttaggcctttcgg
gtatgccacgtcgcattccagattatccggatgcttacgctgggtggaat
gccattagcagttttggctcttacatatccgtagttgggattcgtcgttt
cttcgtggtcgtaacaatcacttcaagcagtggaaataacaaaagatgcg
ctccaagtccttgggctgttgaacagaattcaaccacactggaatggatg
gtacaaagtcctccagcttttcatacttttggagaacttccagctatcaa
ggaaaccgtgaagtaa back to topCoding sequence (CDS) from alignment at AB588943:1239..2804+ >AB588943.1-COX2.m1 ID=AB588943.1-COX2.m1; Name=COX2; organism=Malus x domestica; type=CDS; length=1566bp; location=Sequence derived from: AB588943:1239..2804+ (Malus x domestica
acgacacgatggctgttctccactaaccacaaggatatagggactctata
tttcatcttcggtgctattgctggagtgatgggcacatgcttctcagtac
tgattcgtatggaattagcacgacccggcgatcaaattcttggtggtaat
catcaactttataatgttttaataacggctcacgcttttttaatgatctt
ttttatggttatgccggcgatgataggcggatctggtaattggtctgttc
cgattctgataggtgcacctgacatggcatttccacgattaaataatatt
tcattctggttgttgccacctagtctcttgctcctattaagctcagcctt
agtagaagtgggtagcggcactgggtggacggtctatccgcccttaagtg
gtattaccagccattctggaggagctgttgatttagcaatttctagtctt
catctatctggtgtttcatccattttaggttctatcaattttataacaac
tatctccaacatgcgtggacctggaatgactatgcatagatcacccctat
ttgtgtggtccgttctagtgacagcattcctacttttattatcacttccg
gtactggcgggggcaattaccatgttattaaccgatcgaaactttaatac
aaccttttctgatcccgctggagggggagaccccatattataccagcatc
tctttcggttctttggtcatccagaagtgtatattcccattctgcctgga
tccggtatcataagtcatatcgtttcgactttttcgggaaaaccggtctt
cgggtatctaggcatggtttatgccatgatcagtacaggtgttcttggat
ttcttgtttgggctcatcatatgtttactgtgggcttagacgttgatacc
cgtgcctactttaccgcagctaccatgatcatagccgtccccactggaat
aaaaatctttagttggatcgctaccatgtgggggggctcgatacaataca
aaacacccatgttatttgctgtagggttcatctttttgttcaccatagga
ggactcactggaatagtcctggcaaattctgggctagacattgctctaca
tgatacttattatgtggttgcacatttccattatgtactttctatgggag
ccgtttttgctttatttgcaggatttcactattgggtgggtaaaatcttt
ggtcggacataccctgaaactttagggcaaatacatttttggatcacttt
tttcggggttaatctgaccttctttccaatgcatttcttaggcctttcgg
gtatgccacgtcgcattccagattatccggatgcttacgctgggtggaat
gccattagcagttttggctcttacatatccgtagttgggattcgtcgttt
cttcgtggtcgtaacaatcacttcaagcagtggaaataacaaaagatgcg
ctccaagtccttgggctgttgaacagaattcaaccacactggaatggatg
gtacaaagtcctccagcttttcatacttttggagaacttccagctatcaa
ggaaaccgtgaagtaa back to top
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