SCL29, HM122678.1-SCL29.m1 (mRNA) Malus x domestica

Transcript Overview


Name	SCL29
Unique Name	HM122678.1-SCL29.m1
Type	mRNA
Organism	Malus x domestica (Apple)
Source	genbank
Product	SCL domain class transcription factor

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
HM122678.1-SCL29.m1-cds1	HM122678.1-SCL29.m1-cds1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
SCL29	HM122678.1-SCL29.p1	Malus x domestica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	302399045
nuccore	HM122678.1

Alignments

Feature Name	Type	Location	Analysis
HM122678	region	HM122678:3..1661+	NCBI Rosaceae gene and mRNA sequences
Chr09	chromosome	Chr09:15735881..15737539-	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr13	chromosome	chr13:30511943..30513601-	Malus x domestica Whole Genome v1.0 Assembly & Annotation
chr13	chromosome	chr13:34466259..34467917+	Malus x domestica Whole Genome v1.0p Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at HM122678:3..1661+
coding sequence from alignment at HM122678:3..1661+

mRNA sequence

>HM122678.1-SCL29.m1 ID=HM122678.1-SCL29.m1; Name=SCL29; organism=Malus x domestica; type=mRNA; length=1659bp
atgaccactgaacaaccagagccaaactccacctcagatcatatcttgga
ttggcttgaagattcagtcactttcttcccatctttctgggatgatcctt
accattcaaatgacatcgatggaggacttcaatggtgggatgagagccat
gatcttgttcatcccaccaccaatcctacttgtctcaacaacccaactgg
catttcaatcccaacaaccaccacagggcccccaaatccagccaatttga
atcatccgtcacctaccgattcatctaagaagcgaaaggcgtccccggaa
cagcaacacattgatcggaagaaccaccacggccgtccgatcaatcctgc
cgtcccggggaaccaatcaggtgaagaggtagtagtggtgccagttaaga
aatcaaatgggaacaaaaaagggacagccaagggtacggggaataactgt
aataacggtaatagcaaggaagggaggtgggcagagcagttgctaaaccc
ttgtgcctcagccatcacaggtgggaattcgacacgtgtccagcacctcc
tcttcgttctccacgagcttgcctcagtcaccggcgacgccaaccaccgc
ttggcagctcacgggctccatgcgctgaatcagcacctgtcctcctcctc
ctcctcctctgcccctaacggctctgcctcagcggcgccggttactttca
cttccacagaaccaagatttttccaaaaatctctgatgaaattctatgag
gtgagtccatggtttgcatttccaaataacattgcgaactcttcaattct
ccaacttattgcggaagaatttgatcgaactcgaacccttcacattgtcg
atgtcggtgtgtctcatggtatgcaatggcctactctgctcgaggccctg
actcaccggccaggcggccctccgccattggtcaagatcacagttattgc
cggcgctgaaaacaaccaaaacagagggaccccatttgcagtaggtcctc
ccggtgaaaatttctccaatagactcctcagtttcgccaagtacatgaac
atcaatttgcaaattaagcgcctcgacgatcagccattgaaaactctgaa
tgctcaactgatcgatgcctccaatgacgaaacactgatcgtttgcgtgc
aattcaggctacaccaactgaaccacaacgccccggatgagagaaccgag
ttcttgaagtccctgaggagcatggagccaaagggggtgatcctaagcga
gaacaacatggagtgcagctgcaacaactgcggggattttgcgacggggt
tttcgaggcaggtggagtacttgtggaggttcttggactcgaccagcgcg
gcgttcaaagggcgggagagcgaggagaggagggtgatggaaggggaggc
agcgaaggcactgacgaaccggggggagatgaatgaggggaaggagaagt
ggggtgagaggatgagaagggtagggtttgtgggggaggtgtttggggag
gatgccattgatggaggaagagccttgctgaggaagtatgatagtaattg
ggagatgaaagtggatgagaaggatgggtgtgtagggttgtggtggaagg
ggcagcctgtttctttttgttcattgtggaagcctcatgagagagaaggc
aacaattaa

protein sequence of SCL29

>HM122678.1-SCL29.p1 ID=HM122678.1-SCL29.p1; Name=SCL29; organism=Malus x domestica; type=polypeptide; length=552bp
MTTEQPEPNSTSDHILDWLEDSVTFFPSFWDDPYHSNDIDGGLQWWDESH
DLVHPTTNPTCLNNPTGISIPTTTTGPPNPANLNHPSPTDSSKKRKASPE
QQHIDRKNHHGRPINPAVPGNQSGEEVVVVPVKKSNGNKKGTAKGTGNNC
NNGNSKEGRWAEQLLNPCASAITGGNSTRVQHLLFVLHELASVTGDANHR
LAAHGLHALNQHLSSSSSSSAPNGSASAAPVTFTSTEPRFFQKSLMKFYE
VSPWFAFPNNIANSSILQLIAEEFDRTRTLHIVDVGVSHGMQWPTLLEAL
THRPGGPPPLVKITVIAGAENNQNRGTPFAVGPPGENFSNRLLSFAKYMN
INLQIKRLDDQPLKTLNAQLIDASNDETLIVCVQFRLHQLNHNAPDERTE
FLKSLRSMEPKGVILSENNMECSCNNCGDFATGFSRQVEYLWRFLDSTSA
AFKGRESEERRVMEGEAAKALTNRGEMNEGKEKWGERMRRVGFVGEVFGE
DAIDGGRALLRKYDSNWEMKVDEKDGCVGLWWKGQPVSFCSLWKPHEREG
NN

mRNA from alignment at HM122678:3..1661+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>HM122678.1-SCL29.m1 ID=HM122678.1-SCL29.m1; Name=SCL29; organism=Malus x domestica; type=mRNA; length=1659bp; location=Sequence derived from: HM122678:3..1661+ (Malus x domestica
atgaccactgaacaaccagagccaaactccacctcagatcatatcttgga
ttggcttgaagattcagtcactttcttcccatctttctgggatgatcctt
accattcaaatgacatcgatggaggacttcaatggtgggatgagagccat
gatcttgttcatcccaccaccaatcctacttgtctcaacaacccaactgg
catttcaatcccaacaaccaccacagggcccccaaatccagccaatttga
atcatccgtcacctaccgattcatctaagaagcgaaaggcgtccccggaa
cagcaacacattgatcggaagaaccaccacggccgtccgatcaatcctgc
cgtcccggggaaccaatcaggtgaagaggtagtagtggtgccagttaaga
aatcaaatgggaacaaaaaagggacagccaagggtacggggaataactgt
aataacggtaatagcaaggaagggaggtgggcagagcagttgctaaaccc
ttgtgcctcagccatcacaggtgggaattcgacacgtgtccagcacctcc
tcttcgttctccacgagcttgcctcagtcaccggcgacgccaaccaccgc
ttggcagctcacgggctccatgcgctgaatcagcacctgtcctcctcctc
ctcctcctctgcccctaacggctctgcctcagcggcgccggttactttca
cttccacagaaccaagatttttccaaaaatctctgatgaaattctatgag
gtgagtccatggtttgcatttccaaataacattgcgaactcttcaattct
ccaacttattgcggaagaatttgatcgaactcgaacccttcacattgtcg
atgtcggtgtgtctcatggtatgcaatggcctactctgctcgaggccctg
actcaccggccaggcggccctccgccattggtcaagatcacagttattgc
cggcgctgaaaacaaccaaaacagagggaccccatttgcagtaggtcctc
ccggtgaaaatttctccaatagactcctcagtttcgccaagtacatgaac
atcaatttgcaaattaagcgcctcgacgatcagccattgaaaactctgaa
tgctcaactgatcgatgcctccaatgacgaaacactgatcgtttgcgtgc
aattcaggctacaccaactgaaccacaacgccccggatgagagaaccgag
ttcttgaagtccctgaggagcatggagccaaagggggtgatcctaagcga
gaacaacatggagtgcagctgcaacaactgcggggattttgcgacggggt
tttcgaggcaggtggagtacttgtggaggttcttggactcgaccagcgcg
gcgttcaaagggcgggagagcgaggagaggagggtgatggaaggggaggc
agcgaaggcactgacgaaccggggggagatgaatgaggggaaggagaagt
ggggtgagaggatgagaagggtagggtttgtgggggaggtgtttggggag
gatgccattgatggaggaagagccttgctgaggaagtatgatagtaattg
ggagatgaaagtggatgagaaggatgggtgtgtagggttgtggtggaagg
ggcagcctgtttctttttgttcattgtggaagcctcatgagagagaaggc
aacaattaa

Coding sequence (CDS) from alignment at HM122678:3..1661+

>HM122678.1-SCL29.m1 ID=HM122678.1-SCL29.m1; Name=SCL29; organism=Malus x domestica; type=CDS; length=1659bp; location=Sequence derived from: HM122678:3..1661+ (Malus x domestica
atgaccactgaacaaccagagccaaactccacctcagatcatatcttgga
ttggcttgaagattcagtcactttcttcccatctttctgggatgatcctt
accattcaaatgacatcgatggaggacttcaatggtgggatgagagccat
gatcttgttcatcccaccaccaatcctacttgtctcaacaacccaactgg
catttcaatcccaacaaccaccacagggcccccaaatccagccaatttga
atcatccgtcacctaccgattcatctaagaagcgaaaggcgtccccggaa
cagcaacacattgatcggaagaaccaccacggccgtccgatcaatcctgc
cgtcccggggaaccaatcaggtgaagaggtagtagtggtgccagttaaga
aatcaaatgggaacaaaaaagggacagccaagggtacggggaataactgt
aataacggtaatagcaaggaagggaggtgggcagagcagttgctaaaccc
ttgtgcctcagccatcacaggtgggaattcgacacgtgtccagcacctcc
tcttcgttctccacgagcttgcctcagtcaccggcgacgccaaccaccgc
ttggcagctcacgggctccatgcgctgaatcagcacctgtcctcctcctc
ctcctcctctgcccctaacggctctgcctcagcggcgccggttactttca
cttccacagaaccaagatttttccaaaaatctctgatgaaattctatgag
gtgagtccatggtttgcatttccaaataacattgcgaactcttcaattct
ccaacttattgcggaagaatttgatcgaactcgaacccttcacattgtcg
atgtcggtgtgtctcatggtatgcaatggcctactctgctcgaggccctg
actcaccggccaggcggccctccgccattggtcaagatcacagttattgc
cggcgctgaaaacaaccaaaacagagggaccccatttgcagtaggtcctc
ccggtgaaaatttctccaatagactcctcagtttcgccaagtacatgaac
atcaatttgcaaattaagcgcctcgacgatcagccattgaaaactctgaa
tgctcaactgatcgatgcctccaatgacgaaacactgatcgtttgcgtgc
aattcaggctacaccaactgaaccacaacgccccggatgagagaaccgag
ttcttgaagtccctgaggagcatggagccaaagggggtgatcctaagcga
gaacaacatggagtgcagctgcaacaactgcggggattttgcgacggggt
tttcgaggcaggtggagtacttgtggaggttcttggactcgaccagcgcg
gcgttcaaagggcgggagagcgaggagaggagggtgatggaaggggaggc
agcgaaggcactgacgaaccggggggagatgaatgaggggaaggagaagt
ggggtgagaggatgagaagggtagggtttgtgggggaggtgtttggggag
gatgccattgatggaggaagagccttgctgaggaagtatgatagtaattg
ggagatgaaagtggatgagaaggatgggtgtgtagggttgtggtggaagg
ggcagcctgtttctttttgttcattgtggaagcctcatgagagagaaggc
aacaattaa