TTG1, GU173813.1-TTG1.m1 (mRNA) Malus x domestica

Transcript Overview


Name	TTG1
Unique Name	GU173813.1-TTG1.m1
Type	mRNA
Organism	Malus x domestica (Apple)
Source	genbank
Product	TTG1
Genbank Note	MdTTG1; WD40 repeat protein; similar to AtTTG1; may be involved in accumulation of flavonoids and formation of root hair and trichomes

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
GU173813.1-TTG1.m1-cds1	GU173813.1-TTG1.m1-cds1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
TTG1	GU173813.1-TTG1.p1	Malus x domestica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	298155481
nuccore	GU173813.1

Alignments

Feature Name	Type	Location	Analysis
GU173813	region	GU173813:1..1029+	NCBI Rosaceae gene and mRNA sequences
Chr01	chromosome	Chr01:31833440..31834468-	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr1	chromosome	chr1:28763873..28764901+	Malus x domestica Whole Genome v1.0 Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at GU173813:1..1029+
coding sequence from alignment at GU173813:1..1029+

mRNA sequence

>GU173813.1-TTG1.m1 ID=GU173813.1-TTG1.m1; Name=TTG1; organism=Malus x domestica; type=mRNA; length=1029bp
atggagaactctacgcaagaatcccatctcagagcggagaactcggtgac
gtacgagtcgccgtacccgctgtacgcaatggcctttgcctcgccccaaa
cccgaacccgccaccagcaccaccgaatcgccgtcggcagctttatcgag
gagtactcgaaccgggtcgatatcctttccttcgacccggataccctttc
aataaagccgaacccgaccctctccttcgaccacccttatccgcccacca
agctcatgttccacccgaaccccaacgccctccacaaaaccaacgacgtc
ttagcttcctctggcgactacctccgcctttgggaggtcggcgactccac
cgtcgagcctatccaggtgttaaacaacagcaagaccagcgagttttgcg
ctccgctgacgtcattcgattggaacgacattgagccccggcgaattggg
acttccagcatcgacaccacctgcacaatttgggacatcgaaaagggtgt
cgtcgagacgcagctgattgctcacgataaagaggtgtacgacatcgcgt
ggggggaagctagggtttttgcttcggtttcggctgatgggtcggtgaga
attttcgatttgagggacaaggagcactccacgatcatctatgagagccc
tcagccggatacccctttgcttcgattggcttggaacaagcaggatttga
ggtacatggccacaattttgatggacagcaataaagttgtgatcttggat
atccgatcgccgacgatgccagtggcggagctggagaggcacagaggtag
tgtgaatgctattgcttgggccccccagagttgtaggcacatttgctctg
ctggggatgacactcaggcgcttatttgggacctgcccacggtcgctggg
ccgaatggaatcgaccccatgtcgatgtactccgcaggtgcggagattaa
tcagctgcagtggtctgctgcacagcctgattggatttccattgcatttt
ctaacaagatgcagcttttgaaggtttga

protein sequence of TTG1

>GU173813.1-TTG1.p1 ID=GU173813.1-TTG1.p1; Name=TTG1; organism=Malus x domestica; type=polypeptide; length=342bp
MENSTQESHLRAENSVTYESPYPLYAMAFASPQTRTRHQHHRIAVGSFIE
EYSNRVDILSFDPDTLSIKPNPTLSFDHPYPPTKLMFHPNPNALHKTNDV
LASSGDYLRLWEVGDSTVEPIQVLNNSKTSEFCAPLTSFDWNDIEPRRIG
TSSIDTTCTIWDIEKGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVR
IFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILD
IRSPTMPVAELERHRGSVNAIAWAPQSCRHICSAGDDTQALIWDLPTVAG
PNGIDPMSMYSAGAEINQLQWSAAQPDWISIAFSNKMQLLKV

mRNA from alignment at GU173813:1..1029+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>GU173813.1-TTG1.m1 ID=GU173813.1-TTG1.m1; Name=TTG1; organism=Malus x domestica; type=mRNA; length=1029bp; location=Sequence derived from: GU173813:1..1029+ (Malus x domestica
atggagaactctacgcaagaatcccatctcagagcggagaactcggtgac
gtacgagtcgccgtacccgctgtacgcaatggcctttgcctcgccccaaa
cccgaacccgccaccagcaccaccgaatcgccgtcggcagctttatcgag
gagtactcgaaccgggtcgatatcctttccttcgacccggataccctttc
aataaagccgaacccgaccctctccttcgaccacccttatccgcccacca
agctcatgttccacccgaaccccaacgccctccacaaaaccaacgacgtc
ttagcttcctctggcgactacctccgcctttgggaggtcggcgactccac
cgtcgagcctatccaggtgttaaacaacagcaagaccagcgagttttgcg
ctccgctgacgtcattcgattggaacgacattgagccccggcgaattggg
acttccagcatcgacaccacctgcacaatttgggacatcgaaaagggtgt
cgtcgagacgcagctgattgctcacgataaagaggtgtacgacatcgcgt
ggggggaagctagggtttttgcttcggtttcggctgatgggtcggtgaga
attttcgatttgagggacaaggagcactccacgatcatctatgagagccc
tcagccggatacccctttgcttcgattggcttggaacaagcaggatttga
ggtacatggccacaattttgatggacagcaataaagttgtgatcttggat
atccgatcgccgacgatgccagtggcggagctggagaggcacagaggtag
tgtgaatgctattgcttgggccccccagagttgtaggcacatttgctctg
ctggggatgacactcaggcgcttatttgggacctgcccacggtcgctggg
ccgaatggaatcgaccccatgtcgatgtactccgcaggtgcggagattaa
tcagctgcagtggtctgctgcacagcctgattggatttccattgcatttt
ctaacaagatgcagcttttgaaggtttga

Coding sequence (CDS) from alignment at GU173813:1..1029+

>GU173813.1-TTG1.m1 ID=GU173813.1-TTG1.m1; Name=TTG1; organism=Malus x domestica; type=CDS; length=1029bp; location=Sequence derived from: GU173813:1..1029+ (Malus x domestica
atggagaactctacgcaagaatcccatctcagagcggagaactcggtgac
gtacgagtcgccgtacccgctgtacgcaatggcctttgcctcgccccaaa
cccgaacccgccaccagcaccaccgaatcgccgtcggcagctttatcgag
gagtactcgaaccgggtcgatatcctttccttcgacccggataccctttc
aataaagccgaacccgaccctctccttcgaccacccttatccgcccacca
agctcatgttccacccgaaccccaacgccctccacaaaaccaacgacgtc
ttagcttcctctggcgactacctccgcctttgggaggtcggcgactccac
cgtcgagcctatccaggtgttaaacaacagcaagaccagcgagttttgcg
ctccgctgacgtcattcgattggaacgacattgagccccggcgaattggg
acttccagcatcgacaccacctgcacaatttgggacatcgaaaagggtgt
cgtcgagacgcagctgattgctcacgataaagaggtgtacgacatcgcgt
ggggggaagctagggtttttgcttcggtttcggctgatgggtcggtgaga
attttcgatttgagggacaaggagcactccacgatcatctatgagagccc
tcagccggatacccctttgcttcgattggcttggaacaagcaggatttga
ggtacatggccacaattttgatggacagcaataaagttgtgatcttggat
atccgatcgccgacgatgccagtggcggagctggagaggcacagaggtag
tgtgaatgctattgcttgggccccccagagttgtaggcacatttgctctg
ctggggatgacactcaggcgcttatttgggacctgcccacggtcgctggg
ccgaatggaatcgaccccatgtcgatgtactccgcaggtgcggagattaa
tcagctgcagtggtctgctgcacagcctgattggatttccattgcatttt
ctaacaagatgcagcttttgaaggtttga