PGIP, AF196911.1-PGIP.m1 (mRNA) Physocarpus opulifolius

Transcript Overview


Name	PGIP
Unique Name	AF196911.1-PGIP.m1
Type	mRNA
Organism	Physocarpus opulifolius ()
Source	genbank
Product	polygalacturonase inhibitor protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PGIP	AF196911.1-PGIP	Physocarpus opulifolius	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
AF196911.1-PGIP.m1-cds1	AF196911.1-PGIP.m1-cds1	Physocarpus opulifolius	CDS
AF196911.1-PGIP.m1-cds2	AF196911.1-PGIP.m1-cds2	Physocarpus opulifolius	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
PGIP	AF196911.1-PGIP.p1	Physocarpus opulifolius	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	13873207
nuccore	AF196911.1

Alignments

Feature Name	Type	Location	Analysis
AF196911	region	AF196911:1..840+	NCBI Rosaceae gene and mRNA sequences

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at AF196911:1..840+
coding sequence from alignment at AF196911:1..840+

mRNA sequence

>AF196911.1-PGIP.m1 ID=AF196911.1-PGIP.m1; Name=PGIP; organism=Physocarpus opulifolius; type=mRNA; length=751bp
tcatggaacccagacaacgattgctgtgactggtattctgtcacctgtga
ttccaccaacaaccgcatcaactccctcaccatcttcgccggagaagtct
ccggccaaatcccgacccaagtcggcgacttaccctatcttgaaaccctt
gaatttcacaagcaacccaatctcactggcccaatccagccctccattgt
caagctcaaaagcctcaagttcctgcgcctcagctggaccaacctctcag
gctctatccctgacttcctcagccaactcaagaacctcmccttccttgat
ctctccttcggcaacttcacaggttccatccccagctcgctttcaaagct
cccgaacctcaacgctcttcatctggaccgtaacaagctcacaggtcata
tcccgaagtcattcggagagttccagggcagcgttccagatctctatctc
tcccacaaccagctctcaggcagcataccaacctcatttgccaaaatgga
tttcagccgcatagacttatcccgtaacaagcttgaaggggatgcatccg
tgatattcgggccgaacaagacaacccagattgtggacctgtcgaggaac
ttgctggagtttaatctgtcaaaggtggtgtttccaaagagcttgacttc
cctggatatcaaccataacaaaatcacagggagtattcctgtggagctga
cccaactcgatttgcagttcctaaacgtgagctacaacaggctgtgtggt
a

protein sequence of PGIP

>AF196911.1-PGIP.p1 ID=AF196911.1-PGIP.p1; Name=PGIP; organism=Physocarpus opulifolius; type=polypeptide; length=250bp
SWNPDNDCCDWYSVTCDSTNNRINSLTIFAGEVSGQIPTQVGDLPYLETL
EFHKQPNLTGPIQPSIVKLKSLKFLRLSWTNLSGSIPDFLSQLKNLXFLD
LSFGNFTGSIPSSLSKLPNLNALHLDRNKLTGHIPKSFGEFQGSVPDLYL
SHNQLSGSIPTSFAKMDFSRIDLSRNKLEGDASVIFGPNKTTQIVDLSRN
LLEFNLSKVVFPKSLTSLDINHNKITGSIPVELTQLDLQFLNVSYNRLCG

mRNA from alignment at AF196911:1..840+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>AF196911.1-PGIP.m1 ID=AF196911.1-PGIP.m1; Name=PGIP; organism=Physocarpus opulifolius; type=mRNA; length=840bp; location=Sequence derived from: AF196911:1..840+ (Physocarpus opulifolius
tcatggaacccagacaacgattgctgtgactggtattctgtcacctgtga
ttccaccaacaaccgcatcaactccctcaccatcttcgccggagaagtct
ccggccaaatcccgacccaagtcggcgacttaccctatcttgaaaccctt
gaatttcacaagcaacccaatctcactggcccaatccagccctccattgt
caagctcaaaagcctcaagttcctgcgcctcagctggaccaacctctcag
gctctatccctgacttcctcagccaactcaagaacctcmccttccttgat
ctctccttcggcaacttcacaggttccatccccagctcgctttcaaagct
cccgaacctcaacgctcttcatctggaccgtaacaagctcacaggtttga
tattcctttgatatttctgtctggctaacaagtactggcattagatacaa
aatttgcatatgaatttaacacctcgcttgcaggtcatatcccgaagtca
ttcggagagttccagggcagcgttccagatctctatctctcccacaacca
gctctcaggcagcataccaacctcatttgccaaaatggatttcagccgca
tagacttatcccgtaacaagcttgaaggggatgcatccgtgatattcggg
ccgaacaagacaacccagattgtggacctgtcgaggaacttgctggagtt
taatctgtcaaaggtggtgtttccaaagagcttgacttccctggatatca
accataacaaaatcacagggagtattcctgtggagctgacccaactcgat
ttgcagttcctaaacgtgagctacaacaggctgtgtggta

Coding sequence (CDS) from alignment at AF196911:1..840+

>AF196911.1-PGIP.m1 ID=AF196911.1-PGIP.m1; Name=PGIP; organism=Physocarpus opulifolius; type=CDS; length=751bp; location=Sequence derived from: AF196911:1..840+ (Physocarpus opulifolius
tcatggaacccagacaacgattgctgtgactggtattctgtcacctgtga
ttccaccaacaaccgcatcaactccctcaccatcttcgccggagaagtct
ccggccaaatcccgacccaagtcggcgacttaccctatcttgaaaccctt
gaatttcacaagcaacccaatctcactggcccaatccagccctccattgt
caagctcaaaagcctcaagttcctgcgcctcagctggaccaacctctcag
gctctatccctgacttcctcagccaactcaagaacctcmccttccttgat
ctctccttcggcaacttcacaggttccatccccagctcgctttcaaagct
cccgaacctcaacgctcttcatctggaccgtaacaagctcacaggtcata
tcccgaagtcattcggagagttccagggcagcgttccagatctctatctc
tcccacaaccagctctcaggcagcataccaacctcatttgccaaaatgga
tttcagccgcatagacttatcccgtaacaagcttgaaggggatgcatccg
tgatattcgggccgaacaagacaacccagattgtggacctgtcgaggaac
ttgctggagtttaatctgtcaaaggtggtgtttccaaagagcttgacttc
cctggatatcaaccataacaaaatcacagggagtattcctgtggagctga
cccaactcgatttgcagttcctaaacgtgagctacaacaggctgtgtggt
a