PGIP, AF196905.1-PGIP.m1 (mRNA) Lyonothamnus floribundus

Transcript Overview


Name	PGIP
Unique Name	AF196905.1-PGIP.m1
Type	mRNA
Organism	Lyonothamnus floribundus ()
Source	genbank
Product	polygalacturonase inhibitor protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PGIP	AF196905.1-PGIP	Lyonothamnus floribundus	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
AF196905.1-PGIP.m1-cds1	AF196905.1-PGIP.m1-cds1	Lyonothamnus floribundus	CDS
AF196905.1-PGIP.m1-cds2	AF196905.1-PGIP.m1-cds2	Lyonothamnus floribundus	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
PGIP	AF196905.1-PGIP.p1	Lyonothamnus floribundus	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	13873195
nuccore	AF196905.1

Alignments

Feature Name	Type	Location	Analysis
AF196905	region	AF196905:1..875+	NCBI Rosaceae gene and mRNA sequences

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at AF196905:1..875+
coding sequence from alignment at AF196905:1..875+

mRNA sequence

>AF196905.1-PGIP.m1 ID=AF196905.1-PGIP.m1; Name=PGIP; organism=Lyonothamnus floribundus; type=mRNA; length=751bp
tcatggaagccagacactgactgctgtgactggtactgtgtcacctgtga
ctccaccacaaaccgcataaactcccttaccatcttcgccggtagtgtaa
ccggcaaaatcccgacccaagtcggcgacttgccatatcttgaaaccctt
gaatttcacaagcaacccaatctcaccggccccatccaaccctccattgt
caagctcaaaagcctcaagttcctgcgcctcagctggaccaacatatcag
gctctgttcctgacttcctcagccaactcaagaaccttacttttcttgac
ctctctttcaacaacctcacaggctccattcctagctcgctttctcagct
cacgaacctcaacgctcttcatcttgaccgcaacaaactcacaggtcata
ttccgaagtcattcggagaattccatggcaatgttccagagctctatctc
tcccacaaccaactgtcaggcaacataccaacctcatttgcccaaatgga
cttcaaccgcatagacttatcacgtaacaagctcgaaggtgacgcgttca
tgatatttggatcgaataagaccacccaaattgtggacctgtctagaaac
ctactgaaatttaatctctcaaaggtggagtttccgaatagcttgacttc
gttggatatcaaccataacagcatcacggggcctattccggtggagatga
cccaactgaatttgcagttcctgaacgtgagctacaacaggctgtgtggt
a

protein sequence of PGIP

>AF196905.1-PGIP.p1 ID=AF196905.1-PGIP.p1; Name=PGIP; organism=Lyonothamnus floribundus; type=polypeptide; length=250bp
SWKPDTDCCDWYCVTCDSTTNRINSLTIFAGSVTGKIPTQVGDLPYLETL
EFHKQPNLTGPIQPSIVKLKSLKFLRLSWTNISGSVPDFLSQLKNLTFLD
LSFNNLTGSIPSSLSQLTNLNALHLDRNKLTGHIPKSFGEFHGNVPELYL
SHNQLSGNIPTSFAQMDFNRIDLSRNKLEGDAFMIFGSNKTTQIVDLSRN
LLKFNLSKVEFPNSLTSLDINHNSITGPIPVEMTQLNLQFLNVSYNRLCG

mRNA from alignment at AF196905:1..875+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>AF196905.1-PGIP.m1 ID=AF196905.1-PGIP.m1; Name=PGIP; organism=Lyonothamnus floribundus; type=mRNA; length=875bp; location=Sequence derived from: AF196905:1..875+ (Lyonothamnus floribundus
tcatggaagccagacactgactgctgtgactggtactgtgtcacctgtga
ctccaccacaaaccgcataaactcccttaccatcttcgccggtagtgtaa
ccggcaaaatcccgacccaagtcggcgacttgccatatcttgaaaccctt
gaatttcacaagcaacccaatctcaccggccccatccaaccctccattgt
caagctcaaaagcctcaagttcctgcgcctcagctggaccaacatatcag
gctctgttcctgacttcctcagccaactcaagaaccttacttttcttgac
ctctctttcaacaacctcacaggctccattcctagctcgctttctcagct
cacgaacctcaacgctcttcatcttgaccgcaacaaactcacaggtacca
aatttttatttaacatttttcagattcgtttagtacatttccttcaaaat
tttcatataaacttgttgctgtcaatattttagtttacgtcaatcgatat
ttaataccttgctcacaggtcatattccgaagtcattcggagaattccat
ggcaatgttccagagctctatctctcccacaaccaactgtcaggcaacat
accaacctcatttgcccaaatggacttcaaccgcatagacttatcacgta
acaagctcgaaggtgacgcgttcatgatatttggatcgaataagaccacc
caaattgtggacctgtctagaaacctactgaaatttaatctctcaaaggt
ggagtttccgaatagcttgacttcgttggatatcaaccataacagcatca
cggggcctattccggtggagatgacccaactgaatttgcagttcctgaac
gtgagctacaacaggctgtgtggta

Coding sequence (CDS) from alignment at AF196905:1..875+

>AF196905.1-PGIP.m1 ID=AF196905.1-PGIP.m1; Name=PGIP; organism=Lyonothamnus floribundus; type=CDS; length=751bp; location=Sequence derived from: AF196905:1..875+ (Lyonothamnus floribundus
tcatggaagccagacactgactgctgtgactggtactgtgtcacctgtga
ctccaccacaaaccgcataaactcccttaccatcttcgccggtagtgtaa
ccggcaaaatcccgacccaagtcggcgacttgccatatcttgaaaccctt
gaatttcacaagcaacccaatctcaccggccccatccaaccctccattgt
caagctcaaaagcctcaagttcctgcgcctcagctggaccaacatatcag
gctctgttcctgacttcctcagccaactcaagaaccttacttttcttgac
ctctctttcaacaacctcacaggctccattcctagctcgctttctcagct
cacgaacctcaacgctcttcatcttgaccgcaacaaactcacaggtcata
ttccgaagtcattcggagaattccatggcaatgttccagagctctatctc
tcccacaaccaactgtcaggcaacataccaacctcatttgcccaaatgga
cttcaaccgcatagacttatcacgtaacaagctcgaaggtgacgcgttca
tgatatttggatcgaataagaccacccaaattgtggacctgtctagaaac
ctactgaaatttaatctctcaaaggtggagtttccgaatagcttgacttc
gttggatatcaaccataacagcatcacggggcctattccggtggagatga
cccaactgaatttgcagttcctgaacgtgagctacaacaggctgtgtggt
a