PGIP, AF196902.1-PGIP.m1 (mRNA) Kerria japonica

Transcript Overview


Name	PGIP
Unique Name	AF196902.1-PGIP.m1
Type	mRNA
Organism	Kerria japonica ()
Source	genbank
Product	polygalacturonase inhibitor protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PGIP	AF196902.1-PGIP	Kerria japonica	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
AF196902.1-PGIP.m1-cds1	AF196902.1-PGIP.m1-cds1	Kerria japonica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
PGIP	AF196902.1-PGIP.p1	Kerria japonica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	13873189
nuccore	AF196902.1

Alignments

Feature Name	Type	Location	Analysis
AF196902	region	AF196902:1..751+	NCBI Rosaceae gene and mRNA sequences

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at AF196902:1..751+
coding sequence from alignment at AF196902:1..751+

mRNA sequence

>AF196902.1-PGIP.m1 ID=AF196902.1-PGIP.m1; Name=PGIP; organism=Kerria japonica; type=mRNA; length=751bp
tcatggaacccagacaccgactgctgtgactggtactccgtcacctgtga
ttccaccacaaaccgcatcaactcactcaccatcttcgcaggccaagtct
ccggccaaatccccgcccaagttggtgacttgccgtatcttgaaaccctt
cagtttcacaagcaacccaatctcactggccccatccagccctccattgc
caagctcaaaaacctcaagtccctgcgcctcagctggaccaacatctcag
gctctgtccctgacttcctcagcaaactcaagaacctcaacttccttgag
ctctccttcaacaacctcacaggctccatccccagctcgctttcgcagct
tccaaacctcaacgctcttcatctagaccggaacaagctcacaggtcaca
tccccaagtcatttggacaattctcaggcaacgttccagacctctttctc
tcccacaaccagctctcaggtagcataccaacctcattttccaaaatgga
cttcagtcgaatagacttatcacgtaacaagctagaaggcgacgcgtcca
tgatattcgggtccaacaagaccacccagattgtggatctgtcgaggaac
ttgctagagtttaatctgtcaaaggtggagtttcccaagagcttaacttc
attggacatcaaccataacaagatcacggggagtataccagtggagttta
cccaactgaatctgcagttcctgaacgtgagctacaacaggctgtgtggt
a

protein sequence of PGIP

>AF196902.1-PGIP.p1 ID=AF196902.1-PGIP.p1; Name=PGIP; organism=Kerria japonica; type=polypeptide; length=250bp
SWNPDTDCCDWYSVTCDSTTNRINSLTIFAGQVSGQIPAQVGDLPYLETL
QFHKQPNLTGPIQPSIAKLKNLKSLRLSWTNISGSVPDFLSKLKNLNFLE
LSFNNLTGSIPSSLSQLPNLNALHLDRNKLTGHIPKSFGQFSGNVPDLFL
SHNQLSGSIPTSFSKMDFSRIDLSRNKLEGDASMIFGSNKTTQIVDLSRN
LLEFNLSKVEFPKSLTSLDINHNKITGSIPVEFTQLNLQFLNVSYNRLCG

mRNA from alignment at AF196902:1..751+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>AF196902.1-PGIP.m1 ID=AF196902.1-PGIP.m1; Name=PGIP; organism=Kerria japonica; type=mRNA; length=751bp; location=Sequence derived from: AF196902:1..751+ (Kerria japonica
tcatggaacccagacaccgactgctgtgactggtactccgtcacctgtga
ttccaccacaaaccgcatcaactcactcaccatcttcgcaggccaagtct
ccggccaaatccccgcccaagttggtgacttgccgtatcttgaaaccctt
cagtttcacaagcaacccaatctcactggccccatccagccctccattgc
caagctcaaaaacctcaagtccctgcgcctcagctggaccaacatctcag
gctctgtccctgacttcctcagcaaactcaagaacctcaacttccttgag
ctctccttcaacaacctcacaggctccatccccagctcgctttcgcagct
tccaaacctcaacgctcttcatctagaccggaacaagctcacaggtcaca
tccccaagtcatttggacaattctcaggcaacgttccagacctctttctc
tcccacaaccagctctcaggtagcataccaacctcattttccaaaatgga
cttcagtcgaatagacttatcacgtaacaagctagaaggcgacgcgtcca
tgatattcgggtccaacaagaccacccagattgtggatctgtcgaggaac
ttgctagagtttaatctgtcaaaggtggagtttcccaagagcttaacttc
attggacatcaaccataacaagatcacggggagtataccagtggagttta
cccaactgaatctgcagttcctgaacgtgagctacaacaggctgtgtggt
a

Coding sequence (CDS) from alignment at AF196902:1..751+

>AF196902.1-PGIP.m1 ID=AF196902.1-PGIP.m1; Name=PGIP; organism=Kerria japonica; type=CDS; length=751bp; location=Sequence derived from: AF196902:1..751+ (Kerria japonica
tcatggaacccagacaccgactgctgtgactggtactccgtcacctgtga
ttccaccacaaaccgcatcaactcactcaccatcttcgcaggccaagtct
ccggccaaatccccgcccaagttggtgacttgccgtatcttgaaaccctt
cagtttcacaagcaacccaatctcactggccccatccagccctccattgc
caagctcaaaaacctcaagtccctgcgcctcagctggaccaacatctcag
gctctgtccctgacttcctcagcaaactcaagaacctcaacttccttgag
ctctccttcaacaacctcacaggctccatccccagctcgctttcgcagct
tccaaacctcaacgctcttcatctagaccggaacaagctcacaggtcaca
tccccaagtcatttggacaattctcaggcaacgttccagacctctttctc
tcccacaaccagctctcaggtagcataccaacctcattttccaaaatgga
cttcagtcgaatagacttatcacgtaacaagctagaaggcgacgcgtcca
tgatattcgggtccaacaagaccacccagattgtggatctgtcgaggaac
ttgctagagtttaatctgtcaaaggtggagtttcccaagagcttaacttc
attggacatcaaccataacaagatcacggggagtataccagtggagttta
cccaactgaatctgcagttcctgaacgtgagctacaacaggctgtgtggt
a