PGIP, AF196868.1-PGIP.m1 (mRNA) Aruncus dioicus

Transcript Overview
NamePGIP
Unique NameAF196868.1-PGIP.m1
TypemRNA
OrganismAruncus dioicus ()
Sourcegenbank
Productpolygalacturonase inhibitor protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
AF196868regionAF196868:1..855 +NCBI Rosaceae gene and mRNA sequencesn/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
NCBI Rosaceae gene and mRNA sequences2021-06-03
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PGIPAF196868.1-PGIPAruncus dioicusgene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
AF196868.1-PGIP.m1-cds1AF196868.1-PGIP.m1-cds1Aruncus dioicusCDS
AF196868.1-PGIP.m1-cds2AF196868.1-PGIP.m1-cds2Aruncus dioicusCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
PGIPAF196868.1-PGIP.p1Aruncus dioicuspolypeptide


Cross References
External references for this mRNA
DatabaseAccession
GI13873126
nuccoreAF196868.1
Sequences
The following sequences are available for this feature:

mRNA sequence

>AF196868.1-PGIP.m1 ID=AF196868.1-PGIP.m1; Name=PGIP; organism=Aruncus dioicus; type=mRNA; length=748bp
tcatggcataatgataccgattgctgcaattggtattgtgtcacttgtga
ttccaccacaaaccggatcaactccttcaccgtctccggaggactctccg
gccaaatcccaccacaagtaggcgatttgccttatctcgaaaacctcgac
attcgcaagcatcccaatctcactggtccaatccaacccacaattgccaa
gctwaaaaagctaactttcctacgcctyaactggaacaacctctctggct
ctgtccctgacttcctcagcgaactcaagaayctcaccttccttgacctc
tccttcaacaacctcacaggctcaattcccagctcactttctaggcttca
aaacctctacggtcttcgtctagatcgcaacaagctcacaggtcctatcc
ccaagtcatttggagacttccctgtcaatgcaccaactatatttctatca
tacaaccagctctcaggcaaaataccaacctcgttagccaaacttgactt
cagccaaatagacctgtcacgcaacaagctcgaaggcgacgcgtcaatga
tattcggggaaaacaagacgacacagattgtggacttgtctaggaacttg
ttagagttcaatctgtcaaaggtgcaattttcgaagagcttgactgccat
tgatctcaaccataacaagatctttggtagtattccggcggtgttcaccc
aactgaactttcagttgctgtatgtcagctacaacagattgtgtggtc
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protein sequence of PGIP

>AF196868.1-PGIP.p1 ID=AF196868.1-PGIP.p1; Name=PGIP; organism=Aruncus dioicus; type=polypeptide; length=249bp
SWHNDTDCCNWYCVTCDSTTNRINSFTVSGGLSGQIPPQVGDLPYLENLD
IRKHPNLTGPIQPTIAKLKKLTFLRLNWNNLSGSVPDFLSELKNLTFLDL
SFNNLTGSIPSSLSRLQNLYGLRLDRNKLTGPIPKSFGDFPVNAPTIFLS
YNQLSGKIPTSLAKLDFSQIDLSRNKLEGDASMIFGENKTTQIVDLSRNL
LEFNLSKVQFSKSLTAIDLNHNKIFGSIPAVFTQLNFQLLYVSYNRLCG
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mRNA from alignment at AF196868:1..855+

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>AF196868.1-PGIP.m1 ID=AF196868.1-PGIP.m1; Name=PGIP; organism=Aruncus dioicus; type=mRNA; length=855bp; location=Sequence derived from: AF196868:1..855+ (Aruncus dioicus
tcatggcataatgataccgattgctgcaattggtattgtgtcacttgtga
ttccaccacaaaccggatcaactccttcaccgtctccggaggactctccg
gccaaatcccaccacaagtaggcgatttgccttatctcgaaaacctcgac
attcgcaagcatcccaatctcactggtccaatccaacccacaattgccaa
gctwaaaaagctaactttcctacgcctyaactggaacaacctctctggct
ctgtccctgacttcctcagcgaactcaagaayctcaccttccttgacctc
tccttcaacaacctcacaggctcaattcccagctcactttctaggcttca
aaacctctacggtcttcgtctagatcgcaacaagctcacaggtacgaata
atgagttctgttactcgtattgttgtcaattggtttagttctttcctgta
actttctcgacatcataattcatgaacatcataatacctctcttacaggt
cctatccccaagtcatttggagacttccctgtcaatgcaccaactatatt
tctatcatacaaccagctctcaggcaaaataccaacctcgttagccaaac
ttgacttcagccaaatagacctgtcacgcaacaagctcgaaggcgacgcg
tcaatgatattcggggaaaacaagacgacacagattgtggacttgtctag
gaacttgttagagttcaatctgtcaaaggtgcaattttcgaagagcttga
ctgccattgatctcaaccataacaagatctttggtagtattccggcggtg
ttcacccaactgaactttcagttgctgtatgtcagctacaacagattgtg
tggtc
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Coding sequence (CDS) from alignment at AF196868:1..855+

>AF196868.1-PGIP.m1 ID=AF196868.1-PGIP.m1; Name=PGIP; organism=Aruncus dioicus; type=CDS; length=748bp; location=Sequence derived from: AF196868:1..855+ (Aruncus dioicus
tcatggcataatgataccgattgctgcaattggtattgtgtcacttgtga
ttccaccacaaaccggatcaactccttcaccgtctccggaggactctccg
gccaaatcccaccacaagtaggcgatttgccttatctcgaaaacctcgac
attcgcaagcatcccaatctcactggtccaatccaacccacaattgccaa
gctwaaaaagctaactttcctacgcctyaactggaacaacctctctggct
ctgtccctgacttcctcagcgaactcaagaayctcaccttccttgacctc
tccttcaacaacctcacaggctcaattcccagctcactttctaggcttca
aaacctctacggtcttcgtctagatcgcaacaagctcacaggtcctatcc
ccaagtcatttggagacttccctgtcaatgcaccaactatatttctatca
tacaaccagctctcaggcaaaataccaacctcgttagccaaacttgactt
cagccaaatagacctgtcacgcaacaagctcgaaggcgacgcgtcaatga
tattcggggaaaacaagacgacacagattgtggacttgtctaggaacttg
ttagagttcaatctgtcaaaggtgcaattttcgaagagcttgactgccat
tgatctcaaccataacaagatctttggtagtattccggcggtgttcaccc
aactgaactttcagttgctgtatgtcagctacaacagattgtgtggtc
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