PE1, AY324809.1-PE1.m1 (mRNA) Fragaria x ananassa

Transcript Overview


Name	PE1
Unique Name	AY324809.1-PE1.m1
Type	mRNA
Organism	Fragaria x ananassa (Strawberry)
Source	genbank
Product	pectinesterase
Genbank Note	FaPE1; pectin methylesterase

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
AY324809.1-PE1.m1-cds1	AY324809.1-PE1.m1-cds1	Fragaria x ananassa	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
PE1	AY324809.1-PE1.p1	Fragaria x ananassa	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	33520429
nuccore	AY324809.1

Alignments

Feature Name	Type	Location	Analysis
AY324809	region	AY324809:55..1599+	NCBI Rosaceae gene and mRNA sequences
LG1	chromosome	LG1:6655681..6658248-	Fragaria vesca Whole Genome v1.0 (build 8) Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at AY324809:55..1599+
coding sequence from alignment at AY324809:55..1599+

mRNA sequence

>AY324809.1-PE1.m1 ID=AY324809.1-PE1.m1; Name=PE1; organism=Fragaria x ananassa; type=mRNA; length=1545bp
atggcttccgatcatctaatgtggacgccaaggtttctactggtgctggt
tttcttatcgttcccatattatgctcagtgtggaagtatcagcaacacga
tacagtccgagtgtttgaaagttcccaactcggagtttggcgggtcgatc
atcaacaccattaatgttttgcagcaggtggtgtctattctctccgacgt
tgctaagggttttggggatttccggctttcgaatgccgtcgatgactgtc
tggagttgatggatgactcgactgatcagttgagctggactctctctgct
acccagaataagaatggtaaacataacagcactgggaatttaagttctga
tctgagaacatggctgagtgctacactggttaatcaagacacatgcaatg
aaggacttgatggcaccaacagcattgtcaaaagtttggtgtccggtagc
cttaatcaaataacatccttggttctagaactactcggccaagtgcaccc
aacttctgatcagcacgagtcatcaaatggccaaactccggcgtggttta
aagccgaggaccgcaaacttctacaagcaaatggagtgcctgtggacgtt
gtggtagctcaggatggaaccgggaacttcacaaacatcaccgccgcgat
tctttcggcaccggattacagcttgaagcgctatgtgatttacgtcaaga
aagggctgtataaggagtatgtggaaatcaagaagaagaaatggaacata
atgatgatcggagatggcatggatgctactgtgatcagtgggaatcacaa
ttttgtggatggttggaccacatttcgctctgcaacttttgctgttagtg
gcagaggattcatagcgcgcgatatcacattcgagaacacagcaggaccg
gagaagcacatggcggtggcgctacgatcggactcggacctctcggcgtt
ttaccggtgtgagtttcggggatatcaggacacattatacacgcactcta
tgcgccagttctaccgagactgcaaaatcagcggcactgttgatttcatc
ttcggtgacggcactgttatgttccaaaactgccaaatcctagccagaaa
agccttgccaaaccaaaagaacagcatcacagcccatggccggaagtaca
aagatgagccgaccggcttttcgttccaattctgcaacatttctgcacat
ccggacttgttagccaccccagttaactctagcacacctacataccttgg
tagaccatggaaggaatattccagaactataatcatgcagtccttcatga
gcaatatgataaagcctgcagggtggctagagtggaacggtgacatgttt
ttgaaaacattgttctatggagagcacatgaattatggccctggagcggg
actgggaagccgggttacctggccgggatatcaaaagtttaaccagtccg
gtcaggccaagaactatacagtggccgagtttattgaaggaaacctgtgg
ttgccctctactggtgtcaaatatacttcaggctttggggtttaa

protein sequence of PE1

>AY324809.1-PE1.p1 ID=AY324809.1-PE1.p1; Name=PE1; organism=Fragaria x ananassa; type=polypeptide; length=514bp
MASDHLMWTPRFLLVLVFLSFPYYAQCGSISNTIQSECLKVPNSEFGGSI
INTINVLQQVVSILSDVAKGFGDFRLSNAVDDCLELMDDSTDQLSWTLSA
TQNKNGKHNSTGNLSSDLRTWLSATLVNQDTCNEGLDGTNSIVKSLVSGS
LNQITSLVLELLGQVHPTSDQHESSNGQTPAWFKAEDRKLLQANGVPVDV
VVAQDGTGNFTNITAAILSAPDYSLKRYVIYVKKGLYKEYVEIKKKKWNI
MMIGDGMDATVISGNHNFVDGWTTFRSATFAVSGRGFIARDITFENTAGP
EKHMAVALRSDSDLSAFYRCEFRGYQDTLYTHSMRQFYRDCKISGTVDFI
FGDGTVMFQNCQILARKALPNQKNSITAHGRKYKDEPTGFSFQFCNISAH
PDLLATPVNSSTPTYLGRPWKEYSRTIIMQSFMSNMIKPAGWLEWNGDMF
LKTLFYGEHMNYGPGAGLGSRVTWPGYQKFNQSGQAKNYTVAEFIEGNLW
LPSTGVKYTSGFGV

mRNA from alignment at AY324809:55..1599+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>AY324809.1-PE1.m1 ID=AY324809.1-PE1.m1; Name=PE1; organism=Fragaria x ananassa; type=mRNA; length=1545bp; location=Sequence derived from: AY324809:55..1599+ (Fragaria x ananassa
atggcttccgatcatctaatgtggacgccaaggtttctactggtgctggt
tttcttatcgttcccatattatgctcagtgtggaagtatcagcaacacga
tacagtccgagtgtttgaaagttcccaactcggagtttggcgggtcgatc
atcaacaccattaatgttttgcagcaggtggtgtctattctctccgacgt
tgctaagggttttggggatttccggctttcgaatgccgtcgatgactgtc
tggagttgatggatgactcgactgatcagttgagctggactctctctgct
acccagaataagaatggtaaacataacagcactgggaatttaagttctga
tctgagaacatggctgagtgctacactggttaatcaagacacatgcaatg
aaggacttgatggcaccaacagcattgtcaaaagtttggtgtccggtagc
cttaatcaaataacatccttggttctagaactactcggccaagtgcaccc
aacttctgatcagcacgagtcatcaaatggccaaactccggcgtggttta
aagccgaggaccgcaaacttctacaagcaaatggagtgcctgtggacgtt
gtggtagctcaggatggaaccgggaacttcacaaacatcaccgccgcgat
tctttcggcaccggattacagcttgaagcgctatgtgatttacgtcaaga
aagggctgtataaggagtatgtggaaatcaagaagaagaaatggaacata
atgatgatcggagatggcatggatgctactgtgatcagtgggaatcacaa
ttttgtggatggttggaccacatttcgctctgcaacttttgctgttagtg
gcagaggattcatagcgcgcgatatcacattcgagaacacagcaggaccg
gagaagcacatggcggtggcgctacgatcggactcggacctctcggcgtt
ttaccggtgtgagtttcggggatatcaggacacattatacacgcactcta
tgcgccagttctaccgagactgcaaaatcagcggcactgttgatttcatc
ttcggtgacggcactgttatgttccaaaactgccaaatcctagccagaaa
agccttgccaaaccaaaagaacagcatcacagcccatggccggaagtaca
aagatgagccgaccggcttttcgttccaattctgcaacatttctgcacat
ccggacttgttagccaccccagttaactctagcacacctacataccttgg
tagaccatggaaggaatattccagaactataatcatgcagtccttcatga
gcaatatgataaagcctgcagggtggctagagtggaacggtgacatgttt
ttgaaaacattgttctatggagagcacatgaattatggccctggagcggg
actgggaagccgggttacctggccgggatatcaaaagtttaaccagtccg
gtcaggccaagaactatacagtggccgagtttattgaaggaaacctgtgg
ttgccctctactggtgtcaaatatacttcaggctttggggtttaa

Coding sequence (CDS) from alignment at AY324809:55..1599+

>AY324809.1-PE1.m1 ID=AY324809.1-PE1.m1; Name=PE1; organism=Fragaria x ananassa; type=CDS; length=1545bp; location=Sequence derived from: AY324809:55..1599+ (Fragaria x ananassa
atggcttccgatcatctaatgtggacgccaaggtttctactggtgctggt
tttcttatcgttcccatattatgctcagtgtggaagtatcagcaacacga
tacagtccgagtgtttgaaagttcccaactcggagtttggcgggtcgatc
atcaacaccattaatgttttgcagcaggtggtgtctattctctccgacgt
tgctaagggttttggggatttccggctttcgaatgccgtcgatgactgtc
tggagttgatggatgactcgactgatcagttgagctggactctctctgct
acccagaataagaatggtaaacataacagcactgggaatttaagttctga
tctgagaacatggctgagtgctacactggttaatcaagacacatgcaatg
aaggacttgatggcaccaacagcattgtcaaaagtttggtgtccggtagc
cttaatcaaataacatccttggttctagaactactcggccaagtgcaccc
aacttctgatcagcacgagtcatcaaatggccaaactccggcgtggttta
aagccgaggaccgcaaacttctacaagcaaatggagtgcctgtggacgtt
gtggtagctcaggatggaaccgggaacttcacaaacatcaccgccgcgat
tctttcggcaccggattacagcttgaagcgctatgtgatttacgtcaaga
aagggctgtataaggagtatgtggaaatcaagaagaagaaatggaacata
atgatgatcggagatggcatggatgctactgtgatcagtgggaatcacaa
ttttgtggatggttggaccacatttcgctctgcaacttttgctgttagtg
gcagaggattcatagcgcgcgatatcacattcgagaacacagcaggaccg
gagaagcacatggcggtggcgctacgatcggactcggacctctcggcgtt
ttaccggtgtgagtttcggggatatcaggacacattatacacgcactcta
tgcgccagttctaccgagactgcaaaatcagcggcactgttgatttcatc
ttcggtgacggcactgttatgttccaaaactgccaaatcctagccagaaa
agccttgccaaaccaaaagaacagcatcacagcccatggccggaagtaca
aagatgagccgaccggcttttcgttccaattctgcaacatttctgcacat
ccggacttgttagccaccccagttaactctagcacacctacataccttgg
tagaccatggaaggaatattccagaactataatcatgcagtccttcatga
gcaatatgataaagcctgcagggtggctagagtggaacggtgacatgttt
ttgaaaacattgttctatggagagcacatgaattatggccctggagcggg
actgggaagccgggttacctggccgggatatcaaaagtttaaccagtccg
gtcaggccaagaactatacagtggccgagtttattgaaggaaacctgtgg
ttgccctctactggtgtcaaatatacttcaggctttggggtttaa