CTI, FJ589787.1-CTI.m1 (mRNA) Pyrus pyrifolia

Transcript Overview


Name	CTI
Unique Name	FJ589787.1-CTI.m1
Type	mRNA
Organism	Pyrus pyrifolia ()
Source	genbank
Product	class V chitinase
Genbank Note	pathogenesis-related protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
FJ589787	region	FJ589787:31..1137 +	NCBI Rosaceae gene and mRNA sequences	n/a
scaffold00289	supercontig	CTI:1..1107 . scaffold00289:120342..121778 +		n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
FJ589787.1-CTI.m1-cds1	FJ589787.1-CTI.m1-cds1	Pyrus pyrifolia	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CTI	FJ589787.1-CTI.p1	Pyrus pyrifolia	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	222139396
nuccore	FJ589787.1

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at FJ589787:31..1137+
coding sequence from alignment at FJ589787:31..1137+

mRNA sequence

>FJ589787.1-CTI.m1 ID=FJ589787.1-CTI.m1; Name=CTI; organism=Pyrus pyrifolia; type=mRNA; length=1107bp
atgtcttccaagctaacacttccgtttatcttttccgctctcatcttcct
catccacctcaacttctcatccggccaaaccgtcgttaaagccgcttact
ggtttcccgacagtggcttcccggccgccagcataaactccagccttttc
actcatctcttttgtgcatttgccgatctcaatcccaccacctaccaagt
cacagtttcgtcctccaactccgccccgttctcaagctttacacaaacag
tccagcaaaaaaacccttctgtaaaaaccctgctgtccatcggtggcgga
aattccaaccccgccacctttgccgcaatggctagccaggctacccggcg
taaagcgttcattaactcctccatcacgttagcgcggagttacaacttcc
atggccttgaccttgactgggaatacccatcctccaccacggagatgact
aacttcggtacccttctcacggagtggcgaactgccgtggcaaatgagtc
aaaaaccacgggcaagaccgctttacttctagccgcggctgttttccgct
ctgcggattactacaccataaactaccccttccagtccatatcaaacagt
ttggactggatcaacgtaatggcttacgacttctacggccccggttggtt
cccaaacaacactgcgccacccgctgcgttgtctgcgacttccgttaacg
gggatgccggaatcacgtcgtggattcaggcaggtttggctcccaaaaag
atagtgctaggtcttccattttacggatatgcgtggcgtttgttggacgc
gaataaccacggcatttttgccccagctaatggatccggtataggaacgt
atggtgaccaaggttacagccaaataaaggatttcataagccaaaacgca
gctcagacggtgtacaacgccaccgttgttacgaactattgctactccgg
gaagacgtggattggttacgacgatacgcagagtatctccgccaaggttt
cgtatgctaagacgacgaaaggacttcttggctactttgcatggcatgtc
ggcgctgacagcagtaattgggctctttctcaagcagctgcaagtacatg
gggatga

protein sequence of CTI

>FJ589787.1-CTI.p1 ID=FJ589787.1-CTI.p1; Name=CTI; organism=Pyrus pyrifolia; type=polypeptide; length=368bp
MSSKLTLPFIFSALIFLIHLNFSSGQTVVKAAYWFPDSGFPAASINSSLF
THLFCAFADLNPTTYQVTVSSSNSAPFSSFTQTVQQKNPSVKTLLSIGGG
NSNPATFAAMASQATRRKAFINSSITLARSYNFHGLDLDWEYPSSTTEMT
NFGTLLTEWRTAVANESKTTGKTALLLAAAVFRSADYYTINYPFQSISNS
LDWINVMAYDFYGPGWFPNNTAPPAALSATSVNGDAGITSWIQAGLAPKK
IVLGLPFYGYAWRLLDANNHGIFAPANGSGIGTYGDQGYSQIKDFISQNA
AQTVYNATVVTNYCYSGKTWIGYDDTQSISAKVSYAKTTKGLLGYFAWHV
GADSSNWALSQAAASTWG

mRNA from alignment at FJ589787:31..1137+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>FJ589787.1-CTI.m1 ID=FJ589787.1-CTI.m1; Name=CTI; organism=Pyrus pyrifolia; type=mRNA; length=1107bp; location=Sequence derived from: FJ589787:31..1137+ (Pyrus pyrifolia
atgtcttccaagctaacacttccgtttatcttttccgctctcatcttcct
catccacctcaacttctcatccggccaaaccgtcgttaaagccgcttact
ggtttcccgacagtggcttcccggccgccagcataaactccagccttttc
actcatctcttttgtgcatttgccgatctcaatcccaccacctaccaagt
cacagtttcgtcctccaactccgccccgttctcaagctttacacaaacag
tccagcaaaaaaacccttctgtaaaaaccctgctgtccatcggtggcgga
aattccaaccccgccacctttgccgcaatggctagccaggctacccggcg
taaagcgttcattaactcctccatcacgttagcgcggagttacaacttcc
atggccttgaccttgactgggaatacccatcctccaccacggagatgact
aacttcggtacccttctcacggagtggcgaactgccgtggcaaatgagtc
aaaaaccacgggcaagaccgctttacttctagccgcggctgttttccgct
ctgcggattactacaccataaactaccccttccagtccatatcaaacagt
ttggactggatcaacgtaatggcttacgacttctacggccccggttggtt
cccaaacaacactgcgccacccgctgcgttgtctgcgacttccgttaacg
gggatgccggaatcacgtcgtggattcaggcaggtttggctcccaaaaag
atagtgctaggtcttccattttacggatatgcgtggcgtttgttggacgc
gaataaccacggcatttttgccccagctaatggatccggtataggaacgt
atggtgaccaaggttacagccaaataaaggatttcataagccaaaacgca
gctcagacggtgtacaacgccaccgttgttacgaactattgctactccgg
gaagacgtggattggttacgacgatacgcagagtatctccgccaaggttt
cgtatgctaagacgacgaaaggacttcttggctactttgcatggcatgtc
ggcgctgacagcagtaattgggctctttctcaagcagctgcaagtacatg
gggatga

Coding sequence (CDS) from alignment at FJ589787:31..1137+

>FJ589787.1-CTI.m1 ID=FJ589787.1-CTI.m1; Name=CTI; organism=Pyrus pyrifolia; type=CDS; length=1107bp; location=Sequence derived from: FJ589787:31..1137+ (Pyrus pyrifolia
atgtcttccaagctaacacttccgtttatcttttccgctctcatcttcct
catccacctcaacttctcatccggccaaaccgtcgttaaagccgcttact
ggtttcccgacagtggcttcccggccgccagcataaactccagccttttc
actcatctcttttgtgcatttgccgatctcaatcccaccacctaccaagt
cacagtttcgtcctccaactccgccccgttctcaagctttacacaaacag
tccagcaaaaaaacccttctgtaaaaaccctgctgtccatcggtggcgga
aattccaaccccgccacctttgccgcaatggctagccaggctacccggcg
taaagcgttcattaactcctccatcacgttagcgcggagttacaacttcc
atggccttgaccttgactgggaatacccatcctccaccacggagatgact
aacttcggtacccttctcacggagtggcgaactgccgtggcaaatgagtc
aaaaaccacgggcaagaccgctttacttctagccgcggctgttttccgct
ctgcggattactacaccataaactaccccttccagtccatatcaaacagt
ttggactggatcaacgtaatggcttacgacttctacggccccggttggtt
cccaaacaacactgcgccacccgctgcgttgtctgcgacttccgttaacg
gggatgccggaatcacgtcgtggattcaggcaggtttggctcccaaaaag
atagtgctaggtcttccattttacggatatgcgtggcgtttgttggacgc
gaataaccacggcatttttgccccagctaatggatccggtataggaacgt
atggtgaccaaggttacagccaaataaaggatttcataagccaaaacgca
gctcagacggtgtacaacgccaccgttgttacgaactattgctactccgg
gaagacgtggattggttacgacgatacgcagagtatctccgccaaggttt
cgtatgctaagacgacgaaaggacttcttggctactttgcatggcatgtc
ggcgctgacagcagtaattgggctctttctcaagcagctgcaagtacatg
gggatga