CCD1, EU327776.1-CCD1.m1 (mRNA) Rosa x damascena

Transcript Overview


Name	CCD1
Unique Name	EU327776.1-CCD1.m1
Type	mRNA
Organism	Rosa x damascena ()
Source	genbank
Product	carotenoid cleavage dioxygenase 1

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
EU327776	region	EU327776:1..1659 +	NCBI Rosaceae gene and mRNA sequences	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EU327776.1-CCD1.m1-cds1	EU327776.1-CCD1.m1-cds1	Rosa x damascena	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
CCD1	EU327776.1-CCD1.p1	Rosa x damascena	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	163881523
nuccore	EU327776.1

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at EU327776:1..1659+
coding sequence from alignment at EU327776:1..1659+

mRNA sequence

>EU327776.1-CCD1.m1 ID=EU327776.1-CCD1.m1; Name=CCD1; organism=Rosa x damascena; type=mRNA; length=1659bp
atggcggaggtggtcgagaaacgtcacgatgatgatgtgaaggagaagct
gaagagcaacggcatagtggtgccgaatccgaagccgagcaagggcgtca
cctccacactggtggacacggttgagaagctcattgtcaagttgatgtac
gacagttctcagcctcaccactatctcgccggaaactttgctccggttat
tgaggaaacacctcccaccaaggacctccatgtcatcgggcatcttcctg
attgcttgaatggagagtttgtaagggttggccccaaccccaagtttgct
ccagttgctggatatcactggtttgatggagatggtatgattcatggtat
gcgcatcaaggatgggaaagcaacatatgtttcccgctatgtaaagacat
cacgtcttaagcaagaagagtactttggaggtgccaaatttatgaaggtc
ggagaccttaaggggctttttggtttactcatggtttacatgcagcagct
gagagctaaactgaaagtattggatctttcatatggacatgggacaggta
acacagctttcgtatatcaccatgggaaacttctagctctttcagaggga
gacaaaccttacgttctcaaagttcttgaagatggagatctgcaaacagt
tggcttgttggattatgacaagagattgaagcattccttcactgctcatc
caaaggttgaccctttcactggggagatgtttacatttggctattcgcat
gatccaccatatgtcacatacagagtaatttcaaaggatggtttcatgca
tgatcctatacctataacagtaccagctcctgtcatgatgcatgattttg
ccattactgagaactatgcaattttcatggatcttcccttgtatttcaga
ccaaaggaaatggttaaggaaggcaagctcatattctcatttgatgaaac
aaaaaaagctcgctttggtgtccttccacgatatgcaaaggatgatttgc
taatcagatggtttgagcttccaaattgcttcattttccataatgctaat
gcttgggaggaagaggacgaagttgttttaatgacatgccgccttgagaa
tccagatttagacatggtcaatggaccgatcaagaaaaagcttgacaact
tcaaaaatgagctgtatgagatgagattcaacttaaaaaccggtttagca
acacagaagaaattatcagaatcagctgtagattttcctagggtgaatga
gagctacactggaaggaagcaacgctatgtctatggaaccacactggata
gcattgcaaaggtgacagggatagtcaagtttgatctgcatgctgcacct
gagattggaaaaacgaaaattgaggttggaggaaatgtccaaggccttta
tgacctgggacctggtagatttggttctgaggctatttttgtcccccgtg
ttcctggtattacttcagaagaagatgatggctacttgatattctttgta
catgatgagaatactggaaaatcagcaattcatgtattagatgcaaaaac
aatgtccggtgatcctgttgcaattgttgagttgccccacagagttccat
atgggttccatgccttttttgtgacagaggagcaattgcaagaacaagca
aagttctaa

protein sequence of CCD1

>EU327776.1-CCD1.p1 ID=EU327776.1-CCD1.p1; Name=CCD1; organism=Rosa x damascena; type=polypeptide; length=552bp
MAEVVEKRHDDDVKEKLKSNGIVVPNPKPSKGVTSTLVDTVEKLIVKLMY
DSSQPHHYLAGNFAPVIEETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFA
PVAGYHWFDGDGMIHGMRIKDGKATYVSRYVKTSRLKQEEYFGGAKFMKV
GDLKGLFGLLMVYMQQLRAKLKVLDLSYGHGTGNTAFVYHHGKLLALSEG
DKPYVLKVLEDGDLQTVGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSH
DPPYVTYRVISKDGFMHDPIPITVPAPVMMHDFAITENYAIFMDLPLYFR
PKEMVKEGKLIFSFDETKKARFGVLPRYAKDDLLIRWFELPNCFIFHNAN
AWEEEDEVVLMTCRLENPDLDMVNGPIKKKLDNFKNELYEMRFNLKTGLA
TQKKLSESAVDFPRVNESYTGRKQRYVYGTTLDSIAKVTGIVKFDLHAAP
EIGKTKIEVGGNVQGLYDLGPGRFGSEAIFVPRVPGITSEEDDGYLIFFV
HDENTGKSAIHVLDAKTMSGDPVAIVELPHRVPYGFHAFFVTEEQLQEQA
KF

mRNA from alignment at EU327776:1..1659+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EU327776.1-CCD1.m1 ID=EU327776.1-CCD1.m1; Name=CCD1; organism=Rosa x damascena; type=mRNA; length=1659bp; location=Sequence derived from: EU327776:1..1659+ (Rosa x damascena
atggcggaggtggtcgagaaacgtcacgatgatgatgtgaaggagaagct
gaagagcaacggcatagtggtgccgaatccgaagccgagcaagggcgtca
cctccacactggtggacacggttgagaagctcattgtcaagttgatgtac
gacagttctcagcctcaccactatctcgccggaaactttgctccggttat
tgaggaaacacctcccaccaaggacctccatgtcatcgggcatcttcctg
attgcttgaatggagagtttgtaagggttggccccaaccccaagtttgct
ccagttgctggatatcactggtttgatggagatggtatgattcatggtat
gcgcatcaaggatgggaaagcaacatatgtttcccgctatgtaaagacat
cacgtcttaagcaagaagagtactttggaggtgccaaatttatgaaggtc
ggagaccttaaggggctttttggtttactcatggtttacatgcagcagct
gagagctaaactgaaagtattggatctttcatatggacatgggacaggta
acacagctttcgtatatcaccatgggaaacttctagctctttcagaggga
gacaaaccttacgttctcaaagttcttgaagatggagatctgcaaacagt
tggcttgttggattatgacaagagattgaagcattccttcactgctcatc
caaaggttgaccctttcactggggagatgtttacatttggctattcgcat
gatccaccatatgtcacatacagagtaatttcaaaggatggtttcatgca
tgatcctatacctataacagtaccagctcctgtcatgatgcatgattttg
ccattactgagaactatgcaattttcatggatcttcccttgtatttcaga
ccaaaggaaatggttaaggaaggcaagctcatattctcatttgatgaaac
aaaaaaagctcgctttggtgtccttccacgatatgcaaaggatgatttgc
taatcagatggtttgagcttccaaattgcttcattttccataatgctaat
gcttgggaggaagaggacgaagttgttttaatgacatgccgccttgagaa
tccagatttagacatggtcaatggaccgatcaagaaaaagcttgacaact
tcaaaaatgagctgtatgagatgagattcaacttaaaaaccggtttagca
acacagaagaaattatcagaatcagctgtagattttcctagggtgaatga
gagctacactggaaggaagcaacgctatgtctatggaaccacactggata
gcattgcaaaggtgacagggatagtcaagtttgatctgcatgctgcacct
gagattggaaaaacgaaaattgaggttggaggaaatgtccaaggccttta
tgacctgggacctggtagatttggttctgaggctatttttgtcccccgtg
ttcctggtattacttcagaagaagatgatggctacttgatattctttgta
catgatgagaatactggaaaatcagcaattcatgtattagatgcaaaaac
aatgtccggtgatcctgttgcaattgttgagttgccccacagagttccat
atgggttccatgccttttttgtgacagaggagcaattgcaagaacaagca
aagttctaa

Coding sequence (CDS) from alignment at EU327776:1..1659+

>EU327776.1-CCD1.m1 ID=EU327776.1-CCD1.m1; Name=CCD1; organism=Rosa x damascena; type=CDS; length=1659bp; location=Sequence derived from: EU327776:1..1659+ (Rosa x damascena
atggcggaggtggtcgagaaacgtcacgatgatgatgtgaaggagaagct
gaagagcaacggcatagtggtgccgaatccgaagccgagcaagggcgtca
cctccacactggtggacacggttgagaagctcattgtcaagttgatgtac
gacagttctcagcctcaccactatctcgccggaaactttgctccggttat
tgaggaaacacctcccaccaaggacctccatgtcatcgggcatcttcctg
attgcttgaatggagagtttgtaagggttggccccaaccccaagtttgct
ccagttgctggatatcactggtttgatggagatggtatgattcatggtat
gcgcatcaaggatgggaaagcaacatatgtttcccgctatgtaaagacat
cacgtcttaagcaagaagagtactttggaggtgccaaatttatgaaggtc
ggagaccttaaggggctttttggtttactcatggtttacatgcagcagct
gagagctaaactgaaagtattggatctttcatatggacatgggacaggta
acacagctttcgtatatcaccatgggaaacttctagctctttcagaggga
gacaaaccttacgttctcaaagttcttgaagatggagatctgcaaacagt
tggcttgttggattatgacaagagattgaagcattccttcactgctcatc
caaaggttgaccctttcactggggagatgtttacatttggctattcgcat
gatccaccatatgtcacatacagagtaatttcaaaggatggtttcatgca
tgatcctatacctataacagtaccagctcctgtcatgatgcatgattttg
ccattactgagaactatgcaattttcatggatcttcccttgtatttcaga
ccaaaggaaatggttaaggaaggcaagctcatattctcatttgatgaaac
aaaaaaagctcgctttggtgtccttccacgatatgcaaaggatgatttgc
taatcagatggtttgagcttccaaattgcttcattttccataatgctaat
gcttgggaggaagaggacgaagttgttttaatgacatgccgccttgagaa
tccagatttagacatggtcaatggaccgatcaagaaaaagcttgacaact
tcaaaaatgagctgtatgagatgagattcaacttaaaaaccggtttagca
acacagaagaaattatcagaatcagctgtagattttcctagggtgaatga
gagctacactggaaggaagcaacgctatgtctatggaaccacactggata
gcattgcaaaggtgacagggatagtcaagtttgatctgcatgctgcacct
gagattggaaaaacgaaaattgaggttggaggaaatgtccaaggccttta
tgacctgggacctggtagatttggttctgaggctatttttgtcccccgtg
ttcctggtattacttcagaagaagatgatggctacttgatattctttgta
catgatgagaatactggaaaatcagcaattcatgtattagatgcaaaaac
aatgtccggtgatcctgttgcaattgttgagttgccccacagagttccat
atgggttccatgccttttttgtgacagaggagcaattgcaagaacaagca
aagttctaa