ZF1, AB116545.1-ZF1.m1 (mRNA) Malus x domestica

Transcript Overview


Name	ZF1
Unique Name	AB116545.1-ZF1.m1
Type	mRNA
Organism	Malus x domestica (Apple)
Source	genbank
Product	zinc finger protein

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
NCBI Rosaceae gene and mRNA sequences	2021-06-03

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
AB116545.1-ZF1.m1-cds1	AB116545.1-ZF1.m1-cds1	Malus x domestica	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
ZF1	AB116545.1-ZF1.p1	Malus x domestica	polypeptide

Cross References

External references for this mRNA


Database	Accession
GI	42475462
nuccore	AB116545.1

Alignments

Feature Name	Type	Location	Analysis
AB116545	region	AB116545:247..1815+	NCBI Rosaceae gene and mRNA sequences
Chr04	chromosome	Chr04:28868829..28871972-	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation
chr4	chromosome	chr4:19755033..19758175+	Malus x domestica Whole Genome v1.0 Assembly & Annotation

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at AB116545:247..1815+
coding sequence from alignment at AB116545:247..1815+

mRNA sequence

>AB116545.1-ZF1.m1 ID=AB116545.1-ZF1.m1; Name=ZF1; organism=Malus x domestica; type=mRNA; length=1569bp
atgtcaattatcacaggtagtgctgctactgggagtttctcttcaggaaa
tacaggtggagaagaagttcaacagcaacaacaagagctattaaatcacc
atgcaaactttcatggctccaactccctccttccaacaacacctaatatc
aatagcaatggtatttccactactcaagtacaaaagcaacctccaccagc
taagaagaaaagaaacctaccaggaactccagacccaactgctgaagtga
tagccttgtcaccaaagaccctgatggccacaaaccggtttgtatgtgaa
atttgtaagaaggggttccaaagggaccaaaacctccaactccacagaag
aggtcacaacttgccatggaagcttaagcaaagaacgagcactgagatca
ttaagcgagtctatatctgccccgaatcctcctgcgtccaccacgatcca
tcgcgggcactcggggatcttacgggcatcaaaaagcactttttccggaa
gcacggcgagaaaacctggaaatgtgacaagtgctccaagaaatacgcgg
tgcaatcggactggaaagctcatctaaagacctgtggtactagagaatac
aaatgtgactgtggaaccatcttctccagaagagatagcttcatcaccca
cagagctttttgtgatgccatagctgaagagaacaacagaaaccaaggag
tagtaccaatgtccaacaatattatgggagcaccaaaccaaggccaactt
tccaacagtgagctcatcatcccggcatcaccgcccatgaacaacaaaat
caccgacaacccatcgtcagcaagatcagatactactacatctgatcaat
ttcatcataattttgatgccaaaaatgcccctttaaccctagaaccccaa
caacccttcccaatgcccacaaaacccgtaaacatgttaccgagaaccct
aagcaacaacacttcatcatcaacatcaccatcgtcactactgttcggat
taaaccacggcgggcacgatcaatcactcatccccaactcatcaggccat
ttatccgccacgcaactgctacaaaaagcggctcaaatgggtgcaactat
gagtggtggtcccaaccctaaccctagtggtacaaccataacaagcatgg
caccctcaacctatggtacagctactggtgggtacaacatgaaccccttc
atgcagcagagagatcctaataacattctgcaattagagacctcgccgca
gttttttggcgctaattatgcgcagatggggatgtttagcgggatgttat
tcgatcatgctcagaacaatggtttgttgaagaacatggagcatgaaaat
aatgggacttcaaataaaatagggttcaggggtgctagtaatgtgggtaa
cggtgatacgttgaccgttgactttttagggcttggaggatcgggtaata
ataatagaccagaaaactttcatgatctgcagaaacaacaacatggccag
caagatcagttggggttcggaggaattgatgatcatgatgatcacctaag
aatgcaaagatttggatga

protein sequence of ZF1

>AB116545.1-ZF1.p1 ID=AB116545.1-ZF1.p1; Name=ZF1; organism=Malus x domestica; type=polypeptide; length=522bp
MSIITGSAATGSFSSGNTGGEEVQQQQQELLNHHANFHGSNSLLPTTPNI
NSNGISTTQVQKQPPPAKKKRNLPGTPDPTAEVIALSPKTLMATNRFVCE
ICKKGFQRDQNLQLHRRGHNLPWKLKQRTSTEIIKRVYICPESSCVHHDP
SRALGDLTGIKKHFFRKHGEKTWKCDKCSKKYAVQSDWKAHLKTCGTREY
KCDCGTIFSRRDSFITHRAFCDAIAEENNRNQGVVPMSNNIMGAPNQGQL
SNSELIIPASPPMNNKITDNPSSARSDTTTSDQFHHNFDAKNAPLTLEPQ
QPFPMPTKPVNMLPRTLSNNTSSSTSPSSLLFGLNHGGHDQSLIPNSSGH
LSATQLLQKAAQMGATMSGGPNPNPSGTTITSMAPSTYGTATGGYNMNPF
MQQRDPNNILQLETSPQFFGANYAQMGMFSGMLFDHAQNNGLLKNMEHEN
NGTSNKIGFRGASNVGNGDTLTVDFLGLGGSGNNNRPENFHDLQKQQHGQ
QDQLGFGGIDDHDDHLRMQRFG

mRNA from alignment at AB116545:247..1815+

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>AB116545.1-ZF1.m1 ID=AB116545.1-ZF1.m1; Name=ZF1; organism=Malus x domestica; type=mRNA; length=1569bp; location=Sequence derived from: AB116545:247..1815+ (Malus x domestica
atgtcaattatcacaggtagtgctgctactgggagtttctcttcaggaaa
tacaggtggagaagaagttcaacagcaacaacaagagctattaaatcacc
atgcaaactttcatggctccaactccctccttccaacaacacctaatatc
aatagcaatggtatttccactactcaagtacaaaagcaacctccaccagc
taagaagaaaagaaacctaccaggaactccagacccaactgctgaagtga
tagccttgtcaccaaagaccctgatggccacaaaccggtttgtatgtgaa
atttgtaagaaggggttccaaagggaccaaaacctccaactccacagaag
aggtcacaacttgccatggaagcttaagcaaagaacgagcactgagatca
ttaagcgagtctatatctgccccgaatcctcctgcgtccaccacgatcca
tcgcgggcactcggggatcttacgggcatcaaaaagcactttttccggaa
gcacggcgagaaaacctggaaatgtgacaagtgctccaagaaatacgcgg
tgcaatcggactggaaagctcatctaaagacctgtggtactagagaatac
aaatgtgactgtggaaccatcttctccagaagagatagcttcatcaccca
cagagctttttgtgatgccatagctgaagagaacaacagaaaccaaggag
tagtaccaatgtccaacaatattatgggagcaccaaaccaaggccaactt
tccaacagtgagctcatcatcccggcatcaccgcccatgaacaacaaaat
caccgacaacccatcgtcagcaagatcagatactactacatctgatcaat
ttcatcataattttgatgccaaaaatgcccctttaaccctagaaccccaa
caacccttcccaatgcccacaaaacccgtaaacatgttaccgagaaccct
aagcaacaacacttcatcatcaacatcaccatcgtcactactgttcggat
taaaccacggcgggcacgatcaatcactcatccccaactcatcaggccat
ttatccgccacgcaactgctacaaaaagcggctcaaatgggtgcaactat
gagtggtggtcccaaccctaaccctagtggtacaaccataacaagcatgg
caccctcaacctatggtacagctactggtgggtacaacatgaaccccttc
atgcagcagagagatcctaataacattctgcaattagagacctcgccgca
gttttttggcgctaattatgcgcagatggggatgtttagcgggatgttat
tcgatcatgctcagaacaatggtttgttgaagaacatggagcatgaaaat
aatgggacttcaaataaaatagggttcaggggtgctagtaatgtgggtaa
cggtgatacgttgaccgttgactttttagggcttggaggatcgggtaata
ataatagaccagaaaactttcatgatctgcagaaacaacaacatggccag
caagatcagttggggttcggaggaattgatgatcatgatgatcacctaag
aatgcaaagatttggatga

Coding sequence (CDS) from alignment at AB116545:247..1815+

>AB116545.1-ZF1.m1 ID=AB116545.1-ZF1.m1; Name=ZF1; organism=Malus x domestica; type=CDS; length=1569bp; location=Sequence derived from: AB116545:247..1815+ (Malus x domestica
atgtcaattatcacaggtagtgctgctactgggagtttctcttcaggaaa
tacaggtggagaagaagttcaacagcaacaacaagagctattaaatcacc
atgcaaactttcatggctccaactccctccttccaacaacacctaatatc
aatagcaatggtatttccactactcaagtacaaaagcaacctccaccagc
taagaagaaaagaaacctaccaggaactccagacccaactgctgaagtga
tagccttgtcaccaaagaccctgatggccacaaaccggtttgtatgtgaa
atttgtaagaaggggttccaaagggaccaaaacctccaactccacagaag
aggtcacaacttgccatggaagcttaagcaaagaacgagcactgagatca
ttaagcgagtctatatctgccccgaatcctcctgcgtccaccacgatcca
tcgcgggcactcggggatcttacgggcatcaaaaagcactttttccggaa
gcacggcgagaaaacctggaaatgtgacaagtgctccaagaaatacgcgg
tgcaatcggactggaaagctcatctaaagacctgtggtactagagaatac
aaatgtgactgtggaaccatcttctccagaagagatagcttcatcaccca
cagagctttttgtgatgccatagctgaagagaacaacagaaaccaaggag
tagtaccaatgtccaacaatattatgggagcaccaaaccaaggccaactt
tccaacagtgagctcatcatcccggcatcaccgcccatgaacaacaaaat
caccgacaacccatcgtcagcaagatcagatactactacatctgatcaat
ttcatcataattttgatgccaaaaatgcccctttaaccctagaaccccaa
caacccttcccaatgcccacaaaacccgtaaacatgttaccgagaaccct
aagcaacaacacttcatcatcaacatcaccatcgtcactactgttcggat
taaaccacggcgggcacgatcaatcactcatccccaactcatcaggccat
ttatccgccacgcaactgctacaaaaagcggctcaaatgggtgcaactat
gagtggtggtcccaaccctaaccctagtggtacaaccataacaagcatgg
caccctcaacctatggtacagctactggtgggtacaacatgaaccccttc
atgcagcagagagatcctaataacattctgcaattagagacctcgccgca
gttttttggcgctaattatgcgcagatggggatgtttagcgggatgttat
tcgatcatgctcagaacaatggtttgttgaagaacatggagcatgaaaat
aatgggacttcaaataaaatagggttcaggggtgctagtaatgtgggtaa
cggtgatacgttgaccgttgactttttagggcttggaggatcgggtaata
ataatagaccagaaaactttcatgatctgcagaaacaacaacatggccag
caagatcagttggggttcggaggaattgatgatcatgatgatcacctaag
aatgcaaagatttggatga