Prudu_000872, Prudu_000872_v1.0 (gene) Prunus dulcis

Gene Overview
NamePrudu_000872
Unique NamePrudu_000872_v1.0
Typegene
OrganismPrunus dulcis (Almond)
Sequence length246
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Pd01chromosomePd01:7838728..7838973 +Prunus dulcis Lauranne Genome v1.0n/a
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pdlpdlR16Prunus dulcis Lauranne Genome v1.0Prunus dulcis
pdlroR026Rubus occidentalis Whole Genome v3.0 Assembly & AnnotationRubus occidentalis
pdlroR058Rubus occidentalis Whole Genome v3.0 Assembly & AnnotationRubus occidentalis
pdlrchR016Rosa chinensis Old Blush homozygous genome v2.0Rosa chinensis
pdlrchR026Rosa chinensis Old Blush homozygous genome v2.0Rosa chinensis
pdlppR000Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)Prunus persica
pdlppR027Prunus persica Whole Genome Assembly v2.0 & Annotation v2.1 (v2.0.a1)Prunus persica
pdlpdoR0157Prunus domestica Draft Genome Assembly v1.0 & Annotation v1.0.a1Prunus domestica
pdlpdoR0179Prunus domestica Draft Genome Assembly v1.0 & Annotation v1.0.a1Prunus domestica
pdlpdoR0190Prunus domestica Draft Genome Assembly v1.0 & Annotation v1.0.a1Prunus domestica
pdlpdoR0207Prunus domestica Draft Genome Assembly v1.0 & Annotation v1.0.a1Prunus domestica
pdlpdoR0222Prunus domestica Draft Genome Assembly v1.0 & Annotation v1.0.a1Prunus domestica
pdlptR001Prunus avium Tieton Genome v2.0 Assembly & AnnotationPrunus avium
pdlptR039Prunus avium Tieton Genome v2.0 Assembly & AnnotationPrunus avium
pdlpsaR000Prunus salicina Sanyueli Whole Genome v2.0 Assembly & AnnotationPrunus salicina
pdlpnoR000Prunus dulcis Nonpareil Genome v1.0 Assembly & AnnotationPrunus dulcis
pdlpnoR027Prunus dulcis Nonpareil Genome v1.0 Assembly & AnnotationPrunus dulcis
pdlpmgR001Prunus mongolica Whole Genome v1.0 Assembly & AnnotationPrunus mongolica
pdlpmgR027Prunus mongolica Whole Genome v1.0 Assembly & AnnotationPrunus mongolica
pdlpdtR018Prunus dulcis Texas Genome v3.0 Assembly & AnnotationPrunus dulcis
pdlpdtR046Prunus dulcis Texas Genome v3.0 Assembly & AnnotationPrunus dulcis
pdlpdtR056Prunus dulcis Texas Genome v3.0 Assembly & AnnotationPrunus dulcis
Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
Prudu_000872Prudu_000872_v1.0-proteinPrunus dulcispolypeptide
Prudu_000872_v1.0Prudu_000872_v1.0Prunus dulcispolypeptide


The following CDS feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
BBG92990.1Prudu_000872_v1.0.cds.1Prunus dulcisCDS


Homology
[Close]
BLAST of Prudu_000872 vs. NCBI nr
Match: gi|1139779774|gb|ONI13961.1| (hypothetical protein PRUPE_4G254700 [Prunus persica])

HSP 1 Score: 133.265 bits (334), Expect = 6.850e-36
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 0 
Query:    3 CLCSFKVSKDFESVHSQHAQIREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKRARQDKHGN 70
               + ++SKDFESVHSQHAQIREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKRARQDKHGN
Sbjct:  190 AFVASRLSKDFESVHSQHAQIREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKRARQDKHGN 257
[Close]
BLAST of Prudu_000872 vs. NCBI nr
Match: gi|1220088694|ref|XP_021831144.1| (uncharacterized protein LOC110771198 [Prunus avium])

HSP 1 Score: 114.775 bits (286), Expect = 6.648e-29
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 0 
Query:    3 CLCSFKVSKDFESVHSQHAQIREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKRARQDKHGNIP 72
             + + ++S+ F SVH + +Q REKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWK+AR+DKH NIP
Sbjct:   60 AIVASRLSEKFVSVHFEQSQRREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKKAREDKHSNIP 129
[Close]
BLAST of Prudu_000872 vs. NCBI nr
Match: gi|1027097019|ref|XP_016648178.1| (PREDICTED: uncharacterized protein LOC107880655 [Prunus mume])

HSP 1 Score: 112.079 bits (279), Expect = 3.643e-28
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0 
Query:   18 SQHAQIREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKRARQDKHGNIP 72
            SQ  +IREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWK+ARQDKHGNIP
Sbjct:   80 SQPPEIREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKKARQDKHGNIP 134
[Close]
BLAST of Prudu_000872 vs. NCBI nr
Match: gi|1139782748|gb|ONI16575.1| (hypothetical protein PRUPE_3G107500 [Prunus persica])

HSP 1 Score: 112.464 bits (280), Expect = 4.707e-27
Identity = 55/70 (78.57%), Postives = 58/70 (82.86%), Query Frame = 0 
Query:    3 CLCSFKVSKDFESVHSQHAQIREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKRARQDKHGNIP 72
               + ++SKDFES       IREKLEYNHRLSRKGYAGLEDQLEETM GVEIDRSTLWKRARQDKHGNIP
Sbjct:  225 AFVASRLSKDFES-------IREKLEYNHRLSRKGYAGLEDQLEETMSGVEIDRSTLWKRARQDKHGNIP 287
[Close]
BLAST of Prudu_000872 vs. NCBI nr
Match: gi|645232507|ref|XP_008222897.1| (PREDICTED: uncharacterized protein LOC103322750 [Prunus mume])

HSP 1 Score: 109.383 bits (272), Expect = 5.753e-27
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0 
Query:   18 SQHAQIREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKRARQDKHGNIP 72
            SQ  + REKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWK+ARQDKHGNIP
Sbjct:   80 SQPPESREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKKARQDKHGNIP 134
[Close]
BLAST of Prudu_000872 vs. NCBI nr
Match: gi|1027106725|ref|XP_016650468.1| (PREDICTED: uncharacterized protein LOC107881353 [Prunus mume])

HSP 1 Score: 105.531 bits (262), Expect = 8.198e-27
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 0 
Query:    3 CLCSFKVSKDFESVHSQHAQIREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKRARQDKHGNIP 72
               + ++S  FE+VHS+ +Q REK +YNHRLSRKGY GLEDQLEETMPG EIDRS LWK+AR+DK GNIP
Sbjct:   96 AFVASRLSPYFEAVHSEQSQRREKCQYNHRLSRKGYVGLEDQLEETMPGEEIDRSLLWKKAREDKQGNIP 165
[Close]
BLAST of Prudu_000872 vs. NCBI nr
Match: gi|1027097093|ref|XP_016648208.1| (PREDICTED: uncharacterized protein LOC107880666 [Prunus mume])

HSP 1 Score: 108.997 bits (271), Expect = 1.023e-26
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 0 
Query:   18 SQHAQIREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKRARQDKHGNIP 72
            SQ  + REKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWK+ARQDKHGNIP
Sbjct:   80 SQPPESREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKKARQDKHGNIP 134
[Close]
BLAST of Prudu_000872 vs. NCBI nr
Match: gi|1027087308|ref|XP_016652670.1| (PREDICTED: uncharacterized protein LOC107882007 [Prunus mume])

HSP 1 Score: 107.457 bits (267), Expect = 2.699e-26
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:    3 CLCSFKVSKDFESVHSQHAQIREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKRARQDKHGNIP 72
               + ++S DFE+VHS+ +Q REK EYNHRLSRKGY GLEDQLEETMP  EIDRS LWK+ R+DK GNIP
Sbjct:  195 AFVASRLSPDFEAVHSEQSQRREKCEYNHRLSRKGYVGLEDQLEETMPSEEIDRSLLWKKVREDKQGNIP 264
[Close]
BLAST of Prudu_000872 vs. NCBI nr
Match: gi|1027086608|ref|XP_016652454.1| (PREDICTED: uncharacterized protein LOC107881913 [Prunus mume])

HSP 1 Score: 103.605 bits (257), Expect = 1.549e-25
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 0 
Query:    3 CLCSFKVSKDFESVHSQHAQIREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKRARQDKHGNIP 72
               + ++S +FE VHS+ +Q REK EYNHRLSRKGY  LED+LEETMPG EIDRS LWK+AR+DK GNIP
Sbjct:  127 AFVASRLSPNFEVVHSEESQRREKCEYNHRLSRKGYVVLEDELEETMPGEEIDRSLLWKKAREDKQGNIP 196
[Close]
BLAST of Prudu_000872 vs. NCBI nr
Match: gi|1162533666|ref|XP_020415482.1| (uncharacterized protein LOC18779204 [Prunus persica])

HSP 1 Score: 100.523 bits (249), Expect = 2.271e-24
Identity = 45/65 (69.23%), Postives = 55/65 (84.62%), Query Frame = 0 
Query:    8 KVSKDFESVHSQHAQIREKLEYNHRLSRKGYAGLEDQLEETMPGVEIDRSTLWKRARQDKHGNIP 72
            ++S DFE+VHS+ +Q REK +YNHRLS+KGY G +DQLEETMPG EIDRS  WK+AR+DK GNIP
Sbjct:  106 RLSPDFEAVHSEQSQRREKCKYNHRLSQKGYVGFKDQLEETMPGEEIDRSLPWKKAREDKQGNIP 170
The following BLAST results are available for this feature:
BLAST of Prudu_000872 vs. ExPASy Swiss-Prot
Analysis Date: 2019-06-26 (blastp of Prunus dulcis v4.0.a2 proteins vs UniProt Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Prudu_000872 vs. Araport11
Analysis Date: 2019-06-26 (blastp of Prunus dulcis v4.0.a2 proteins vs Araport11)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Prudu_000872 vs. NCBI nr
Analysis Date: 2019-06-26 (blastp of Prunus dulcis v4.0.a2 proteins vs NCBI nr)
Total hits: 10
Match NameE-valueIdentityDescription
gi|1139779774|gb|ONI13961.1|6.850e-3689.71hypothetical protein PRUPE_4G254700 [Prunus persic... [more]
gi|1220088694|ref|XP_021831144.1|6.648e-2974.29uncharacterized protein LOC110771198 [Prunus avium... [more]
gi|1027097019|ref|XP_016648178.1|3.643e-2892.73PREDICTED: uncharacterized protein LOC107880655 [P... [more]
gi|1139782748|gb|ONI16575.1|4.707e-2778.57hypothetical protein PRUPE_3G107500 [Prunus persic... [more]
gi|645232507|ref|XP_008222897.1|5.753e-2790.91PREDICTED: uncharacterized protein LOC103322750 [P... [more]
gi|1027106725|ref|XP_016650468.1|8.198e-2768.57PREDICTED: uncharacterized protein LOC107881353 [P... [more]
gi|1027097093|ref|XP_016648208.1|1.023e-2690.91PREDICTED: uncharacterized protein LOC107880666 [P... [more]
gi|1027087308|ref|XP_016652670.1|2.699e-2668.57PREDICTED: uncharacterized protein LOC107882007 [P... [more]
gi|1027086608|ref|XP_016652454.1|1.549e-2567.14PREDICTED: uncharacterized protein LOC107881913 [P... [more]
gi|1162533666|ref|XP_020415482.1|2.271e-2469.23uncharacterized protein LOC18779204 [Prunus persic... [more]
back to top
InterPro
Analysis Name: InterProScan Analysis for Prunus dulcis v4.0.a2 proteins
Date Performed: 2019-06-26
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004252Probable transposase, Ptta/En/Spm, plantPFAMPF03004Transposase_24coord: 4..71
e-value: 1.6E-5
score: 25.1

Sequences
The following sequences are available for this feature:

gene sequence

>Prudu_000872_v1.0 ID=Prudu_000872_v1.0; Name=Prudu_000872; organism=Prunus dulcis; type=gene; length=246bp
ATGGGATGCCTTTGTAGCTTCAAGGTTTCCAAAGATTTTGAGTCTGTGCA
TTCTCAACATGCACAGATTAGGGAGAAACTCGAGTACAATCATCGATTGT
CTCGAAAAGGATATGCTGGATTGGAGGATCAATTGGAGGAAACCATGCCT
GGGGTAGAAATTGATCGATCTACCTTATGGAAGAGAGCTAGACAGGACAA
ACATGGTAACATCCCGATCCAAAGGTGGCAGAGAAAGCAAAATTAA
back to top

protein sequence of Prudu_000872_v1.0

>Prudu_000872_v1.0 ID=Prudu_000872_v1.0; Name=Prudu_000872_v1.0; organism=Prunus dulcis; type=polypeptide; length=81bp
MGCLCSFKVSKDFESVHSQHAQIREKLEYNHRLSRKGYAGLEDQLEETMP
GVEIDRSTLWKRARQDKHGNIPIQRWQRKQN
back to top

gene from alignment at Pd01:7838728..7838973+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Prudu_000872_v1.0 ID=Prudu_000872_v1.0; Name=Prudu_000872; organism=Prunus dulcis; type=gene; length=246bp; location=Sequence derived from: Pd01:7838728..7838973+ (Prunus dulcis
ATGGGATGCCTTTGTAGCTTCAAGGTTTCCAAAGATTTTGAGTCTGTGCA
TTCTCAACATGCACAGATTAGGGAGAAACTCGAGTACAATCATCGATTGT
CTCGAAAAGGATATGCTGGATTGGAGGATCAATTGGAGGAAACCATGCCT
GGGGTAGAAATTGATCGATCTACCTTATGGAAGAGAGCTAGACAGGACAA
ACATGGTAACATCCCGATCCAAAGGTGGCAGAGAAAGCAAAATTAA
back to top

Coding sequence (CDS) from alignment at Pd01:7838728..7838973+

>Prudu_000872_v1.0 ID=Prudu_000872_v1.0; Name=Prudu_000872; organism=Prunus dulcis; type=CDS; length=246bp; location=Sequence derived from: Pd01:7838728..7838973+ (Prunus dulcis
ATGGGATGCCTTTGTAGCTTCAAGGTTTCCAAAGATTTTGAGTCTGTGCA
TTCTCAACATGCACAGATTAGGGAGAAACTCGAGTACAATCATCGATTGT
CTCGAAAAGGATATGCTGGATTGGAGGATCAATTGGAGGAAACCATGCCT
GGGGTAGAAATTGATCGATCTACCTTATGGAAGAGAGCTAGACAGGACAA
ACATGGTAACATCCCGATCCAAAGGTGGCAGAGAAAGCAAAATTAA
back to top
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004252Probable_transposase_24