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Marker Overview
| Name | SNP_FB_0438218 |
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| dbSNP ID | . |
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| SNP Array ID | | 480K SNP array for apple: | AX-115183657 | | 20K SNP array for apple: | SNP_FB_0438218 |
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| Type | SNP |
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| SNP Alleles | A/C |
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| Probe 1 | SNP_FB_0438218.probe: GGTTCTTACTTATTCTGCACAGGATAGGTAAAATATTCTTTCTTATCGGT |
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| 5' Flanking Sequence | AATATAGAAGCATAAGGAAGGTAAATCAAATCAAGAAGACAATTGTGTATTAAAAACAAA |
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| 3' Flanking Sequence | ACCGATAAGAAAGAATATTTTACCTATCCTGTGCAGAATAAGTAAGAACCTTCCCATTTA |
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| Species | Malus x domestica |
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| Publication | [view all] |
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| Contact | Michela Troggio
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| Associated With | GWAS0001315 |
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Publications
| Year | Publication |
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| 2014 | Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M. Development and Validation of a 20K Single Nucleotide Polymorphism (SNP) Whole Genome Genotyping Array for Apple (Malus × domestica Borkh). PloS one. 2014; 9(10):e110377. |
| 2016 | Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26. |
Sequence
>SNP_FB_0438218 ID=SNP_FB_0438218; Name=SNP_FB_0438218; organism=Malus x domestica; type=genetic_marker; length=75bp
TCAAATCAAGAAGACAATTGTGTATTAAAAACAAA[G/T]ACCGATAAGA
AAGAATATTTTACCTATCCTGTGCA
Annotated Terms
The
following terms have been associated with
this genetic_marker:
Vocabulary: Rosaceae Trait Ontology
| Term | Definition |
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| 28:quercetin 3-rhamnoside content | quercetin 3-rhamnoside content |
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