FB_AFFY_4105083, FB_AFFY_4105083 (genetic_marker) Malus x domestica

Marker Overview

Name

FB_AFFY_4105083

dbSNP ID

N/A

SNP Array ID

480K SNP array for apple:	AX-105185328
50K SNP array for apple:	AX-105185328

Type

SNP

SNP Alleles

5' Flanking Sequence

ATTCACCGGCTCAGCTGTCACCGGCAAGTTTCTCT

3' Flanking Sequence

TTTGCTTTGGTATTTATTTCTGCTGAAATTTTAAG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
480K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr13	chromosome	Chr13:10942676..10942676 -	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Publications


Year	Publication
2016	Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-BB-F1	13	N/A	44.04	FB_AFFY_4105083	View
2	Apple-NC-F1	13	N/A	53.17	FB_AFFY_4105083	View
3	Apple-NCZFBB-consensus	13	N/A	45.97	FB_AFFY_4105083	View
4	Apple-ZF-F1	13	N/A	48.5	FB_AFFY_4105083	View

Sequence

>FB_AFFY_4105083 ID=FB_AFFY_4105083; Name=FB_AFFY_4105083; organism=Malus x domestica; type=genetic_marker; length=51bp
CAAGTTTCTCT[C/T]TTTGCTTTGGTATTTATTTCTGCTGAAATTTTAA
G