FB_AFFY_5942562, FB_AFFY_5942562 (genetic_marker) Malus x domestica

Marker Overview

Name

FB_AFFY_5942562

dbSNP ID

N/A

SNP Array ID

480K SNP array for apple:	AX-105188256
50K SNP array for apple:	AX-105188256

Type

SNP

SNP Alleles

5' Flanking Sequence

GTGGTGTATTGTTCAAGTCTATAATGATGTTCACC

3' Flanking Sequence

CCTTGTCAGGGTTGCAATGTTCCTGGAGCTGCGTG

Species

Malus x domestica

Publication

[view all]

Libraries


Library Name	Type
480K SNP array for apple	SNP_chip
50K SNP array for apple	SNP_chip

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr14	chromosome	Chr14:1369241..1369241 -	Malus x domestica GDDH13 v1.1 Whole Genome Assembly & Annotation	n/a

Publications


Year	Publication
2016	Bianco L, Cestaro A, Linsmith G, Muranty H, Denance C, Théron A, Poncet C, Micheletti D, Kerschbamer E, Di Pierro EA, Larger S, Pindo M, van de Weg E, Davassi A, Laurens F, Velasco R, Durel CE, Troggio M. Development and validation of the Axiom(®) Apple480K SNP genotyping array. The Plant journal : for cell and molecular biology. 2016 Feb 26.
2020	Rymenants M, van de Weg E, Auwerkerken A, De Wit I, Czech A, Nijland B, Heuven H, De Storme N, and Keulemans W. Detection of QTL for apple fruit acidity and sweetness using sensorial evaluation in multiple pedigreed full-sib families. Tree Genetics & Genomes 16, 71 (2020). https://doi.org/10.1007/s11295-020-01466-8

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Apple-BB-F1	14	N/A	3.72	FB_AFFY_5942562	View
2	Apple-NC-F1	14	N/A	4.06	FB_AFFY_5942562	View
3	Apple-NCZFBB-consensus	14	N/A	4.11	FB_AFFY_5942562	View
4	Apple-ZF-F1	14	N/A	3.46	FB_AFFY_5942562	View

Sequence

>FB_AFFY_5942562 ID=FB_AFFY_5942562; Name=FB_AFFY_5942562; organism=Malus x domestica; type=genetic_marker; length=75bp
GTGGTGTATTGTTCAAGTCTATAATGATGTTCACC[C/T]CCTTGTCAGG
GTTGCAATGTTCCTGGAGCTGCGTG