AX-89862132, AX-89862132 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89862132
Genbank IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88872449
TypeIndel
Probe 1AX-89862132.AX-89862132: AACCCAGTATGAAAGATTTTACGATGTGAA
5' Flanking SequenceACTGAAAAGAGTTCTACCCGTGACATACCAAAACT
3' Flanking SequenceAAGTGTAGCATTTTAGAAAGTATGACCCAAGAGTT
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Strawberry-HK-F1-SNPLG6DN/A3.54AX-89862132View
Sequence
>AX-89862132 ID=AX-89862132; Name=AX-89862132; organism=Fragaria x ananassa; type=genetic_marker; length=77bp
ACTGAAAAGAGTTCTACCCGTGACATACCAAAACT[-/AAG]AAGTGTAG
CATTTTAGAAAGTATGACCCAAGAGTT
Alignments
Feature NameTypeLocationAnalysis
Fvb6 chromosome Fvb6:35704..35776+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb6-3 chromosome Fvb6-3:42812062..42812136+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-2 chromosome Fvb6-2:27032812..27032883+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-4 chromosome Fvb6-4:2515867..2515941- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-1 chromosome Fvb6-1:35542772..35542846- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
LG6 chromosome LG6:35738..35738. Fragaria vesca Whole Genome v1.1 Assembly & Annotation