AX-89862216, AX-89862216 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89862216
Genbank IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88875902
TypeIndel
Probe 1AX-89862216.AX-89862216: AATCGATTCAACGTGATGTAGAAATTGTCC
5' Flanking SequenceGCAAGTTACTATGTAATTGTCAAATAAAAAGCGGA
3' Flanking SequenceCCTGTTAAAGATGTAGTGCAACTTAGCTAACTGCA
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Strawberry-HK-F1-SNPLG6DN/A24.85AX-89862216View
Sequence
>AX-89862216 ID=AX-89862216; Name=AX-89862216; organism=Fragaria x ananassa; type=genetic_marker; length=79bp
GCAAGTTACTATGTAATTGTCAAATAAAAAGCGGA[-/ATTAG]CCTGTT
AAAGATGTAGTGCAACTTAGCTAACTGCA
Alignments
Feature NameTypeLocationAnalysis
Fvb6 chromosome Fvb6:7528037..7528111- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb6-3 chromosome Fvb6-3:34225322..34225396+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-2 chromosome Fvb6-2:20116813..20116882+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-1 chromosome Fvb6-1:27745611..27745685+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-4 chromosome Fvb6-4:8762513..8762587- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
LG6 chromosome LG6:6079899..6079899. Fragaria vesca Whole Genome v1.1 Assembly & Annotation