AX-89808082, AX-89808082 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89808082
Genbank IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88878912
TypeIndel
Probe 1AX-89808082.AX-89808082_probe1: TCTCTAGACTAAGTAGGTTTAGTTTACACC
Probe 2AX-89808082.AX-89872399_probe2: TCTCTAGACTAAGTAGGTTTAGTTTACACG
5' Flanking SequenceTGTGCCAGAAGAGATCTGATTCATCCAAATCAAAT
3' Flanking SequenceGTGGGTGCAAGCTTGATGATAGCTATGGGGCCCCA
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Strawberry-HK-F1-SNPLG6DN/A35.06AX-89808082View
Sequence
>AX-89808082 ID=AX-89808082; Name=AX-89808082; organism=Fragaria x ananassa; type=genetic_marker; length=78bp
TGTGCCAGAAGAGATCTGATTCATCCAAATCAAAT[-/GTGC]GTGGGTG
CAAGCTTGATGATAGCTATGGGGCCCCA
Alignments
Feature NameTypeLocationAnalysis
Fvb6 chromosome Fvb6:9957757..9957826+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb6-1 chromosome Fvb6-1:24851948..24852017+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-3 chromosome Fvb6-3:28348781..28348850- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-3 chromosome Fvb6-3:27567651..27567720- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-2 chromosome Fvb6-2:15759000..15759069- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
LG6 chromosome LG6:12423770..12423770. Fragaria vesca Whole Genome v1.1 Assembly & Annotation