AX-89906521, AX-89906521 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89906521
dbSNP IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88876042
TypeSNP
SNP AllelesA/G
Probe 1AX-89906521.AX-89906521: AAAACGACTCTTATGGTTATTATCCTCAAT
5' Flanking SequenceTCTTTCTGTTTTTCAATACTACGGGAGCTAGAGAA
3' Flanking SequenceTAACTCCTATTATTGGTATTCTCAGCAAAATATCG
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
CommentSNP-SNP (haploSNP)
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Strawberry-HK-F1-SNPLG6DN/A24.18AX-89906521View
Sequence
>AX-89906521 ID=AX-89906521; Name=AX-89906521; organism=Fragaria x ananassa; type=genetic_marker; length=71bp
TCTTTCTGTTTTTCAATACTACGGGAGCTAGAGAARTAACTCCTATTATT
GGTATTCTCAGCAAAATATCG
Alignments
Feature NameTypeLocationAnalysis
Fvb6 chromosome Fvb6:7214133..7214203- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb6-3 chromosome Fvb6-3:34478622..34478692+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-2 chromosome Fvb6-2:20320936..20321006+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-1 chromosome Fvb6-1:29122219..29122289+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-1 chromosome Fvb6-1:28135340..28135410+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-4 chromosome Fvb6-4:8418873..8418943- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-4 chromosome Fvb6-4:8418581..8418651- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
LG6 chromosome LG6:6393808..6393808. Fragaria vesca Whole Genome v1.1 Assembly & Annotation