AX-89850035, AX-89850035 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89850035
dbSNP IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88886435
TypeSNP
SNP AllelesT/C
Probe 1AX-89850035.AX-89850035: GTACGTAAAATTCGACTGTTATATGACCCA
5' Flanking SequenceTGCGTCATGCATTTTAAGCTGACAATATACTGGGT
3' Flanking SequenceTCTTTCCCAGTACAACTGAGGATTTTCACTGATTA
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
CommentSNP-SNP (haploSNP)
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
Alignment of Fragaria x ananassa 90K Array SNPs to Fragaria vesca Genome v2.02016-11-22
90K SNP array for the cultivated strawberry Fragaria x ananassa2014-07-23
Sequence
>AX-89850035 ID=AX-89850035; Name=AX-89850035; organism=Fragaria x ananassa; type=genetic_marker; length=71bp
TGCGTCATGCATTTTAAGCTGACAATATACTGGGTYTCTTTCCCAGTACA
ACTGAGGATTTTCACTGATTA
Alignments
Feature NameTypeLocationAnalysis
Fvb6 chromosome Fvb6:30886627..30886697+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb5 chromosome Fvb5:21711098..21711168+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb4 chromosome Fvb4:811433..811503+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb4 chromosome Fvb4:12825610..12825676+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb2 chromosome Fvb2:22701354..22701424+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb1 chromosome Fvb1:15752964..15753033+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb6 chromosome Fvb6:12878516..12878586- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb5 chromosome Fvb5:17597240..17597310- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb5 chromosome Fvb5:27347255..27347325- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb3 chromosome Fvb3:14360721..14360791- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
LG6 chromosome LG6:30384738..30384738. Fragaria vesca Whole Genome v1.1 Assembly & Annotation