AX-89906306, AX-89906306 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89906306
dbSNP IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88886443
TypeSNP
SNP AllelesT/G
Probe 1AX-89906306.AX-89906306: AAATATTGTTTCTGAATTATTTAATTATCC
5' Flanking SequenceTTTGGGTTGGTGATGCCGACACCACCAAGTGTAAA
3' Flanking SequenceCCTATTAATTTATTAAGTCTTTGTTATAAAGCATG
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
CommentSNP-SNP (haploSNP)
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
Alignment of Fragaria x ananassa 90K Array SNPs to Fragaria vesca Genome v2.02016-11-22
90K SNP array for the cultivated strawberry Fragaria x ananassa2014-07-23
Sequence
>AX-89906306 ID=AX-89906306; Name=AX-89906306; organism=Fragaria x ananassa; type=genetic_marker; length=71bp
TTTGGGTTGGTGATGCCGACACCACCAAGTGTAAAKCCTATTAATTTATT
AAGTCTTTGTTATAAAGCATG
Alignments
Feature NameTypeLocationAnalysis
Fvb6 chromosome Fvb6:31119117..31119187+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb6 chromosome Fvb6:11197732..11197802+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb5 chromosome Fvb5:18544626..18544685+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb4 chromosome Fvb4:11611042..11611101+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb3 chromosome Fvb3:31899359..31899429+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb2 chromosome Fvb2:20397284..20397354+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb6 chromosome Fvb6:7185607..7185677- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb5 chromosome Fvb5:28138406..28138476- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb3 chromosome Fvb3:18215201..18215271- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb3 chromosome Fvb3:26664154..26664224- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
LG6 chromosome LG6:30400578..30400578. Fragaria vesca Whole Genome v1.1 Assembly & Annotation