AX-89906382, AX-89906382 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89906382
dbSNP IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88888686
TypeSNP
SNP AllelesA/T
Probe 1AX-89906382.AX-89906382_probe1: GGTACTTGATAGTCAGTCAAAATAAGTGAA
Probe 2AX-89906382.AX-89804791_probe2: GGTACTTGATAGTCAGTCAAAATAAGTGAT
5' Flanking SequenceCAAGATAAACAAAACTGGCTGGTAGTTGATAAAGA
3' Flanking SequenceAGTGAATAAAACTGACTGATAGTTCATGGCGGGAA
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
CommentSNP-SNP (haploSNP)
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Strawberry-HK-F1-SNPLG6DN/A74.56AX-89906382View
Sequence
>AX-89906382 ID=AX-89906382; Name=AX-89906382; organism=Fragaria x ananassa; type=genetic_marker; length=71bp
CAAGATAAACAAAACTGGCTGGTAGTTGATAAAGAWAGTGAATAAAACTG
ACTGATAGTTCATGGCGGGAA
Alignments
Feature NameTypeLocationAnalysis
Fvb6 chromosome Fvb6:32782051..32782121- Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb6-3 chromosome Fvb6-3:5486189..5486259+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-2 chromosome Fvb6-2:33019511..33019581+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-1 chromosome Fvb6-1:6040392..6040462+ Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
Fvb6-4 chromosome Fvb6-4:31412461..31412531- Fragaria x ananassa Camarosa Genome Assembly v1.0 & Annotation v1.0.a1
LG6 chromosome LG6:34200294..34200294. Fragaria vesca Whole Genome v1.1 Assembly & Annotation