AX-89850883, AX-89850883 (genetic_marker) Fragaria x ananassa

Marker Overview
NameAX-89850883
dbSNP IDN/A
SNP Array ID
90K SNP array for cultivated strawberry:Affx-88894029
TypeSNP
SNP AllelesA/T
Probe 1AX-89850883.AX-89850883_probe1: GACCCCTTCTTAAGTTCCACTTACCGGTAA
Probe 2AX-89850883.AX-89805497_probe2: GACCCCTTCTTAAGTTCCACTTACCGGTAT
5' Flanking SequenceAAAAGACTGGGGAAGAATTCAAGGTGAATGGCCAT
3' Flanking SequenceGATTGAAGCCATACTATGAGGCTTTCAAGGAATAC
SpeciesFragaria x ananassa
Publication[view all]
ContactNahla Bassil
CommentSNP-SNP (haploSNP)
Contact
NameDetails
Nahla Bassil
First name:Nahla
Last name:Bassil
Title:Geneticist
Institution:USDA-ARS, NCGR, Corvallis, OR, USA
Address:USDA-ARS, NCGR, Corvallis, OR, USA
Country:USA
Email:nahla.bassil@ars.usda.gov
Phone:(541) 738-4214
Libraries
Library NameType
90K SNP array for cultivated strawberrySNP_chip
Analyses
This genetic_marker is derived from or has results from the following analyses
Analysis NameDate Performed
Alignment of Fragaria x ananassa 90K Array SNPs to Fragaria vesca Genome v2.02016-11-22
90K SNP array for the cultivated strawberry Fragaria x ananassa2014-07-23
Sequence
>AX-89850883 ID=AX-89850883; Name=AX-89850883; organism=Fragaria x ananassa; type=genetic_marker; length=71bp
AAAAGACTGGGGAAGAATTCAAGGTGAATGGCCATWGATTGAAGCCATAC
TATGAGGCTTTCAAGGAATAC
Alignments
Feature NameTypeLocationAnalysis
Fvb7 chromosome Fvb7:2233557..2233627+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb4 chromosome Fvb4:12012097..12012167+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb3 chromosome Fvb3:14934682..14934735+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb3 chromosome Fvb3:22864281..22864336+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb3 chromosome Fvb3:28622252..28622294+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
Fvb1 chromosome Fvb1:19588209..19588267+ Fragaria vesca Whole Genome v2.0.a1 Assembly & Annotation
LG7 chromosome LG7:6662361..6662361. Fragaria vesca Whole Genome v1.1 Assembly & Annotation