JPsnpHou00379, JPsnpHou00379 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00379
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GGCCTGAGTATGAAAGCCTGCAGGGGAATTCTTCTCTTCCACCAGCCCTTGCTGACGAAT TGTTTAGCTATCAGCTGAAGGATGAGGAGGCTTATCCAAAAGCTCTCACCCAAAACATGA GAATGGTGAAAAAGACCAGTATTACAGTGGATAATTCATTGAGCCCTGTTCATACGGTGC TGCAAATACAGTGTGTTGACCGGAAGGGCCTCTTTTATAGACATTATGAGGACTTCCAAG GACTGCAATATTCAGATTGCCTATGGTAGATTCTCGTCACCTGTGAAAGGCTTCCGAAAT TTGGACCTATTTATTCAGCAGACAAATGGAAAAAAGATTGTTGATCCTGAAGTTCAGGTT GCATTGTGTGCTCGTTTAAAGGAGGAGATCGTTCACCCACTGCGAGTGATCGTTGCCAGC AGGGGCCCGGAAACTGAACTCTTAGTTGCTAATCCAGTTGAGTTATCTGGAAAGGGGAGG CCCCTTGTATTCTATGATGTTACTCTAGCACTGAAGCAATTGGGAGCATCTATTTTTGCG GCTGAAATTGTAAGGCATTCAACATCAGTTTGCCAGTGGGAAATCTACCGATTTCTTTTG GATGATAGTCGTGAATTTCCGTTGGCAAGCAAACAAAATAGAAGTAATATTGTAGAGAGA GTTAGAAGAACCCTCATGGGCTGGTGAGCTGTTACATTCACTCCCCTTTCGAGGATCGCA CTCTTTCCATCTTGTAAGTGCGCTGTACAGCAGTTCCGTCCAAATAGTTATAGTTATCTG CACTCGAGGAGTGTAGAATCACTACTGACTATTTTAGGAGGAAGTTCGTGGTCATGTACT CTGGCACTACTGTGAGACTGCCGAACTATGTTTTAGCTTTTGCCACACAAGGGTTGCCGT CC
3' Flanking Sequence	TACTATGTAACTTGTGTTTTCTTAAAATTTCGAACATGTATGTTCTCTGTATGTTGTATT TTCATCTTGAAGTGCTTATAATGTACTCTGCTTTTCGTAGTTGTGTTCATCTGAAATAAT TATTGTCGTAGTAACCTGGTGTTTATATATAAATATGTTCATCTAGAAAAAAAAAAAAAA C
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 903

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG7	N/A	60.44	JPsnpHou00379	View

Sequence

>JPsnpHou00379 ID=JPsnpHou00379; Name=JPsnpHou00379; organism=Pyrus pyrifolia; type=genetic_marker; length=1084bp
GGCCTGAGTATGAAAGCCTGCAGGGGAATTCTTCTCTTCCACCAGCCCTT
GCTGACGAATTGTTTAGCTATCAGCTGAAGGATGAGGAGGCTTATCCAAA
AGCTCTCACCCAAAACATGAGAATGGTGAAAAAGACCAGTATTACAGTGG
ATAATTCATTGAGCCCTGTTCATACGGTGCTGCAAATACAGTGTGTTGAC
CGGAAGGGCCTCTTTTATAGACATTATGAGGACTTCCAAGGACTGCAATA
TTCAGATTGCCTATGGTAGATTCTCGTCACCTGTGAAAGGCTTCCGAAAT
TTGGACCTATTTATTCAGCAGACAAATGGAAAAAAGATTGTTGATCCTGA
AGTTCAGGTTGCATTGTGTGCTCGTTTAAAGGAGGAGATCGTTCACCCAC
TGCGAGTGATCGTTGCCAGCAGGGGCCCGGAAACTGAACTCTTAGTTGCT
AATCCAGTTGAGTTATCTGGAAAGGGGAGGCCCCTTGTATTCTATGATGT
TACTCTAGCACTGAAGCAATTGGGAGCATCTATTTTTGCGGCTGAAATTG
TAAGGCATTCAACATCAGTTTGCCAGTGGGAAATCTACCGATTTCTTTTG
GATGATAGTCGTGAATTTCCGTTGGCAAGCAAACAAAATAGAAGTAATAT
TGTAGAGAGAGTTAGAAGAACCCTCATGGGCTGGTGAGCTGTTACATTCA
CTCCCCTTTCGAGGATCGCACTCTTTCCATCTTGTAAGTGCGCTGTACAG
CAGTTCCGTCCAAATAGTTATAGTTATCTGCACTCGAGGAGTGTAGAATC
ACTACTGACTATTTTAGGAGGAAGTTCGTGGTCATGTACTCTGGCACTAC
TGTGAGACTGCCGAACTATGTTTTAGCTTTTGCCACACAAGGGTTGCCGT
CCyTACTATGTAACTTGTGTTTTCTTAAAATTTCGAACATGTATGTTCTC
TGTATGTTGTATTTTCATCTTGAAGTGCTTATAATGTACTCTGCTTTTCG
TAGTTGTGTTCATCTGAAATAATTATTGTCGTAGTAACCTGGTGTTTATA
TATAAATATGTTCATCTAGAAAAAAAAAAAAAAC